Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

3701

ID

ENSMUST00000167377

Name

Iqgap1-201

Strand

-

Biotype

protein_coding

Start-end positions

80711583-80803416

CDS Start-stop positions

80713832-80803195

CDS Relative positions

-

Sequences

Transcript sequence

AAT ...

Gene

ID

NCBI:29875

Aliases

AA682088,
D7Ertd237e, D7Ertd257e, ENSMUSG00000030536,
Iqgap1, MGI:1352757, mKIAA0051,
NCBI:29875, OFF:Iqgap1


Chr 7

ORFs

156 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

599999 99

ATG ...

MSS ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Glioma,
Liver, MEF, MESC,
Neutrophil, v6-5
595712 78

TTG ...

LLQ ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
914606 57

ATC ...

IRG ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
602500 90

ATG ...

MSQ ...

Ribo-seq
ATG 7 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, Glioma, Liver,
MEF, MESC, v6-5
916632 48

ATT ...

IIR ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
916651 51

ATC ...

IRW ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
595828 42

GTG ...

VTR ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
915360 54

AGG ...

RQE ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
532863 60

CTG ...

LQP ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Spleen_B_cell
912552 51

ACG ...

TTP ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1473840 30

ATG ...

MGC ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC
596966 84

ATG ...

MPL ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Glioma,
Liver, MEF, MESC
423729 63

TTG ...

LLW ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
753865 81

GTG ...

VGK ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
425233 48

CTG ...

LCS ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Neutrophil,
Spleen_B_cell
534736 114

ATG ...

MKP ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Glioma, Liver, MEF,
MESC, Spleen_B_cell
914325 39

ACG ...

TTL ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
914328 105

ATG ...

MSG ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
915669 45

AAG ...

KQK ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
596156 51

ATG ...

MLS ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil
914971 48

ATC ...

IKI ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
590181 33

GTG ...

VCG ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
598946 129

TTG ...

LAK ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, v6-5
1097181 75

GTG ...

VGE ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
916797 90

AAG ...

KPS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
916793 81

ATG ...

MSG ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
3824 54

TTG ...

LTC ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF,
Skin_tumor
589763 48

ATG ...

MKR ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
914319 63

ACG ...

TFS ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
426452 96

GTG ...

VLP ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
600184 84

ATG ...

MKL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Neutrophil,
v6-5
911982 51

AGG ...

RWN ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
914839 42

ATC ...

ISG ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
426209 156

TTG ...

LMA ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, E14,
MEF, Spleen_B_cell, v6-5
911849 135

ATG ...

MPS ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, Neutrophil
532370 63

GTG ...

VAI ...

Ribo-seq
GTG strong 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF,
Spleen_B_cell
422883 102

ATG ...

MKG ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Spleen_B_cell
916054 132

ATC ...

IRR ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
916962 57

TTG ...

LLK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
600088 108

ATG ...

MSI ...

Ribo-seq
ATG 10 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, Glioma, Liver,
MEF, MESC, v6-5
913351 51

ATA ...

ITT ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
531594 81

ATG ...

MPC ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC
532770 60

ATG ...

MPR ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, Glioma,
Liver, MEF, MESC,
Neutrophil, Spleen_B_cell
913149 84

ACG ...

TVA ...

Ribo-seq
ACG strong 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
842885 42

CTG ...

LWQ ...

Ribo-seq
CTG moderate 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF
602300 54

GTG ...

VES ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC
916609 78

AAG ...

KTF ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
914079 33

ACG ...

TQR ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
916837 99

AGG ...

RAS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
912763 93

ACG ...

TLR ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
915656 78

ATC ...

ILS ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
426297 108

ATG ...

MLP ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC, Spleen_B_cell
841938 132

ATG ...

MRG ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
601545 102

ATG ...

MHL ...

Ribo-seq
ATG 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Glioma, Liver, MEF,
MESC, v6-5
532713 63

TTG ...

LKK ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
594564 36

TTG ...

LVQ ...

Ribo-seq
TTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF,
Neutrophil
912719 78

AAG ...

KFQ ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
426688 156

GTG ...

VAR ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Spleen_B_cell
915721 75

AGG ...

RPC ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
916465 69

AGG ...

RQT ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
591683 63

CTG ...

LLL ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Neutrophil, v6-5
423772 45

TTG ...

LCR ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Neutrophil,
v6-5
425208 105

ATG ...

MRR ...

Ribo-seq
ATG 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Glioma, Liver, MEF,
MESC, Neutrophil, Spleen_B_cell
424105 66

CTG ...

LLL ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, NSC, Spleen_B_cell
601591 141

CTG ...

LIS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
845474 63

GTG ...

VTL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
601540 66

ATG ...

MKF ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC
426470 108

ATG ...

MRG ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
594077 57

TTG ...

LLL ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Neutrophil, NSC
593410 66

TTG ...

LPG ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
MEF, v6-5
3700 39

GTG ...

VGT ...

Ribo-seq
GTG strong 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
MEF, Skin_tumor, Spleen_B_cell
912910 51

ACG ...

TFN ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
424754 96

CTG ...

LQR ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
915364 120

CTG ...

LQR ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
426081 75

CTG ...

LSP ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil, Spleen_B_cell
915748 66

AGG ...

RHM ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1516661 33

TTG ...

LGR ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
531284 60

CTG ...

LSP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
v6-5
601966 36

ATG ...

MRS ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Glioma,
Liver, MEF, MESC,
Neutrophil
591225 66

CTG ...

LLL ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Neutrophil, v6-5
425662 93

CTG ...

LPS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1103327 102

CTG ...

LPS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, v6-5
840570 63

CTG ...

LGE ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
533662 33

ATG ...

MSS ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC, Spleen_B_cell
911779 48

ATA ...

IVK ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
912955 75

ATG ...

MTG ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
424985 144

GTG ...

VWS ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF,
Spleen_B_cell, v6-5
426308 132

CTG ...

LPS ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Neutrophil,
Spleen_B_cell, v6-5
422894 30

ATG ...

MTS ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF, Spleen_B_cell
912612 102

ATC ...

ILK ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
914282 84

AGG ...

RRS ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1100555 63

GTG ...

VER ...

Ribo-seq
GTG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
916013 108

AGG ...

RPP ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
4647 108

TTG ...

LGR ...

Ribo-seq
TTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
MEF, Neutrophil, Skin_tumor,
v6-5
426965 240

GTG ...

VLC ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    CDS
    sORF
3T3, B_cell, BMDC,
Spleen_B_cell
426763 81

TTG ...

LKT ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Neutrophil,
Spleen_B_cell
532493 72

TTG ...

LWS ...

Ribo-seq
TTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, Spleen_B_cell, v6-5
916045 72

ATA ...

IFT ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
845721 81

CTG ...

LCY ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC
530824 99

GTG ...

VAR ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Neutrophil
599157 147

TTG ...

LQL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
531119 60

CTG ...

LWR ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
426237 60

TTG ...

LCR ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil, Spleen_B_cell
916380 66

ACG ...

TTL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
588446 69

ATG ...

MLL ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Neutrophil, v6-5
912881 57

ATT ...

IQT ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
916686 72

AGG ...

RLS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
426130 63

ATG ...

MIE ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Glioma, Liver, MEF,
MESC, Neutrophil, Spleen_B_cell
1475010 48

CTG ...

LWT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
1472919 39

GTG ...

VPY ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
599413 66

TTG ...

LPG ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
MEF, Neutrophil, v6-5
913325 36

AGG ...

RLW ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
534411 57

TTG ...

LST ...

Ribo-seq
TTG moderate 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, MEF, Spleen_B_cell
425092 147

CTG ...

LTP ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Spleen_B_cell
916372 48

ATC ...

ISF ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
602319 177

CTG ...

LKP ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
1067257 120

TTG ...

LTC ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Neutrophil
425179 153

ATG ...

MAW ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF,
Spleen_B_cell, v6-5
916577 54

AGG ...

RIS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
597397 99

CTG ...

LKP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
426830 126

ATG ...

MAP ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, BMDC, MEF,
Spleen_B_cell, v6-5
845848 45

GTG ...

VMT ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
425575 237

TTG ...

LCF ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    CDS
    sORF
3T3, B_cell, BMDC,
Spleen_B_cell
752751 42

ATG ...

MTT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
844648 45

CTG ...

LPS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
426213 108

ATG ...

MTS ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC, Spleen_B_cell,
v6-5
602338 78

CTG ...

LRY ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Neutrophil,
v6-5
426424 180

GTG ...

VIC ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Spleen_B_cell
535236 51

GTG ...

VVP ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
601073 60

TTG ...

LPR ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
MEF, Neutrophil
424222 48

ATG ...

MHL ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Neutrophil, Spleen_B_cell,
v6-5
593616 36

GTG ...

VIR ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
911608 42

ACG ...

TTS ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
916661 180

ATC ...

ILK ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
594071 42

CTG ...

LAV ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
422853 90

CTG ...

LTP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
534443 45

CTG ...

LHI ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Neutrophil,
Spleen_B_cell
531458 42

ATG ...

MRS ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC
531952 63

CTG ...

LTE ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
v6-5
916430 81

AAG ...

KRR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
592013 39

TTG ...

LIA ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil
426921 105

CTG ...

LPT ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
425992 78

CTG ...

LWI ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell, v6-5
601896 54

ATG ...

MNT ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
1672291 54

GTG ...

VTS ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
532625 63

CTG ...

LNI ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Spleen_B_cell
4623 30

ATG ...

MIE ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
915839 138

ATC ...

ISI ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
426618 90

ATG ...

MTL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Glioma, Liver, MEF,
MESC, Neutrophil, Spleen_B_cell
4281 45

CTG ...

LVT ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Skin_tumor
915919 42

AGG ...

RTC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
532358 33

CTG ...

LCS ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Neutrophil,
v6-5
916005 48

ATA ...

ITW ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
534334 39

TTG ...

LWM ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Spleen_B_cell
590977 30

CTG ...

LNK ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
912983 51

AAG ...

KPA ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5