Transcript 36737 | MetamORF

Transcript

ID CARD

MetamORF ID

36737

ENSMUST00000133048

Name

Nudt3-205

Strand

Biotype

retained_intron

Start-end positions

27580705-27583319

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:56409

Aliases

1110011B09Rik,
AA960325, Dipp, Dipp1,
ENSMUSG00000024213, MGI:1928484, NCBI:56409,
Nudt3, OFF:Nudt3

Chr 17

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
37319	81	GTG ...	VLI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1358071	42	GTG ...	VPT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
38560	123	CTG ...	LQC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, NSC, Testis
37017	63	GTG ...	VLE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Testis
382018	90	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
1004952	81	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
708355	33	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
1628262	111	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
36945	126	GTG ...	VLQ ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, NSC, Spleen_B_cell, Testis
37449	60	CTG ...	LED ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, Testis
37930	81	TTG ...	LRQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Testis
36736	105	GTG ...	VQA ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, Testis
1358235	63	CTG ...	LWC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
38361	87	GTG ...	VYV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, v6-5
705748	102	CTG ...	LCP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
706974	48	ATG ...	MCS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Neutrophil
1358689	45	GTG ...	VVP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

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