Transcript 36512 | MetamORF

Transcript

ID CARD

MetamORF ID

36512

ENSMUST00000150874

Name

BC004004-204

Strand

Biotype

processed_transcript

Start-end positions

29298284-29301525

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:80748

Aliases

2400006G15Rik,
BC004004, ENSMUSG00000052712, MGI:2136782,
NCBI:80748, OFF:BC004004

Chr 17

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
39321	201	CTG ...	LFT ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
38902	171	TTG ...	LQL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis, v6-5
384463	57	GTG ...	VPN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Spleen_B_cell
39363	264	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
708097	30	ATG ...	MLP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
39394	225	CTG ...	LQM ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
36511	39	TTG ...	LVI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, R1E, Spleen_B_cell, Testis
39267	243	GTG ...	VPA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Spleen_B_cell, Testis
479699	36	ATG ...	MPM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Spleen_B_cell
386352	45	CTG ...	LSV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, Spleen_B_cell
38881	210	GTG ...	VHD ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
479617	96	ATG ...	MTC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
39182	279	TTG ...	LSA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E, Spleen_B_cell, Testis
39275	126	GTG ...	VAM ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, R1E, Spleen_B_cell, Testis, v6-5

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