Transcript 3626 | MetamORF

Transcript

ID CARD

MetamORF ID

3626

ENSMUST00000117095

Name

Pld3-201

Strand

Biotype

protein_coding

Start-end positions

27532000-27553212

CDS Start-stop positions

27532298-27542115

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:18807

Aliases

ENSMUSG00000003363,
MGI:1333782, NCBI:18807, OFF:Pld3,
Pld3, Sam-9

Chr 7

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
231066	294	CTG ...	LQK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	CDS sORF	BMDC, MEF
224488	84	ATG ...	MVS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC
1443820	48	GTG ...	VQA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Liver, MEF
589478	39	ATG ...	MVA ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
235267	60	ATG ...	MKS ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Glioma, Liver, MEF, MESC
1474950	42	CTG ...	LHF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
1577901	93	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
77679	189	ATG ...	MPP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
841498	30	TTG ...	LRS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
223483	81	CTG ...	LIH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
916019	75	ATC ...	IHR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
843818	36	ATG ...	MKS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
231504	63	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	v6-5
3625	60	ATG ...	MGI ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor, v6-5
235011	78	CTG ...	LIH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
232715	135	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
227752	81	GTG ...	VSC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
1097405	33	GTG ...	VPE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, v6-5
230853	48	CTG ...	LEP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, v6-5
534465	72	TTG ...	LWS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1746345	33	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
222609	45	CTG ...	LHF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
1473227	36	GTG ...	VPR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1443418	36	ATG ...	MSH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
222881	36	ATG ...	MTT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
221162	135	TTG ...	LKP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
424143	57	ATG ...	MSP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Glioma, Liver, MEF, MESC
234867	75	GTG ...	VPH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
77238	210	CTG ...	LRV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
233015	81	CTG ...	LNV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
234284	231	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
75874	129	ATG ...	MNE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
77700	141	TTG ...	LPV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
217884	33	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1441469	39	GTG ...	VMS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
234043	126	ATG ...	MNE ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC
602538	192	CTG ...	LWA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	3T3
422474	45	CTG ...	LEA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
596142	36	GTG ...	VAC ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
214247	72	CTG ...	LVG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, v6-5
3643	126	CTG ...	LGP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor, v6-5
231687	132	CTG ...	LRM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF
72400	135	CTG ...	LRM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
425551	63	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
535258	33	ATG ...	MPV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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