Transcript 36206 | MetamORF

Transcript

ID CARD

MetamORF ID

36206

ENSMUST00000024697

Name

Hcfc1r1-201

Strand

Biotype

protein_coding

Start-end positions

23673608-23675227

CDS Start-stop positions

23673983-23675019

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:353502

Aliases

ENSMUSG00000023904,
Hcfc1r1, HPIP, MGI:2663619,
NCBI:353502, OFF:Hcfc1r1

Chr 17

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1678123	39	CTG ...	LAT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
39066	99	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
36324	123	GTG ...	VAL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	Brain, Testis
385605	108	TTG ...	LMA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
385758	129	CTG ...	LMV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
387427	33	TTG ...	LNP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
1677529	42	CTG ...	LSI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
385111	126	ATG ...	MVA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
37006	48	TTG ...	LPR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
13115	30	CTG ...	LAL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell, Testis
388878	105	ATG ...	MAC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
387095	90	CTG ...	LPV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain

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