Transcript 3608 | MetamORF

Transcript

ID CARD

MetamORF ID

3608

ENSMUST00000205824

Name

Iqgap1-207

Strand

Biotype

retained_intron

Start-end positions

80755121-80803281

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:29875

Aliases

AA682088,
D7Ertd237e, D7Ertd257e, ENSMUSG00000030536,
Iqgap1, MGI:1352757, mKIAA0051,
NCBI:29875, OFF:Iqgap1

Chr 7

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
911719	165	GTG ...	VAY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
912835	219	CTG ...	LDN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
913149	84	ACG ...	TVA ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
912275	96	ACG ...	TDN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
591683	63	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
912154	45	ATG ...	MHL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
840475	69	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
4098	111	CTG ...	LEK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Skin_tumor, Spleen_B_cell
913065	36	ATC ...	IAE ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
422853	90	CTG ...	LTP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
531458	42	ATG ...	MRS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, MEF, Spleen_B_cell
912883	81	ATA ...	ISM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
532713	63	TTG ...	LKK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, MEF, Spleen_B_cell
912424	69	AGG ...	RYR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
912955	75	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
914623	30	CTG ...	LPW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
915746	36	AGG ...	RAL ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
914466	63	AGG ...	RPE ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
914328	105	ATG ...	MSG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
914010	84	ATT ...	IQW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
912305	93	AGG ...	RDV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
3607	102	CTG ...	LCS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, Skin_tumor, Spleen_B_cell
531952	63	CTG ...	LTE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Spleen_B_cell
912048	120	AAG ...	KIE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
914717	198	ATT ...	IDR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
844909	39	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
845075	72	GTG ...	VVS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
913072	96	ATC ...	IQM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
914849	45	AAG ...	KNM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
911947	66	AGG ...	RPG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
4623	30	ATG ...	MIE ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
530824	99	GTG ...	VAR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
588446	69	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
914134	141	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
913541	51	ATG ...	MLP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
914959	210	ATT ...	INE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
914496	36	CTG ...	LYP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
531594	81	ATG ...	MPC ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Spleen_B_cell
531060	93	CTG ...	LFL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
913694	33	ATG ...	MPW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
589763	48	ATG ...	MKR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
915364	120	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
915665	57	AAG ...	KKQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
915542	168	ACG ...	TAL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC

Export data