Transcript 35664 | MetamORF

Transcript

ID CARD

MetamORF ID

35664

ENSMUST00000023426

Name

Cldnd1-201

Strand

Biotype

protein_coding

Start-end positions

58727910-58734251

CDS Start-stop positions

58729456-58733059

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:224250

Aliases

1110019C08Rik,
AA407103, AI849195, AW489850,
Cldn25, Cldnd1, ENSMUSG00000022744,
MGI:2447860, NCBI:224250, OFF:Cldnd1

Chr 16

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
368448	114	CTG ...	LEN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1495804	108	GTG ...	VLW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
35663	33	ATG ...	MGE ...	Ribo-seq	ATG		15	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
1495110	87	CTG ...	LGC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC
368473	36	ATG ...	MLP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
369087	147	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
368494	105	TTG ...	LDG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
375455	33	TTG ...	LPA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
377734	111	CTG ...	LCL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC
377143	105	CTG ...	LYL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC
367698	120	ATG ...	MYL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
421976	39	ATG ...	MPE ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	BMDC, C2C12, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
12614	135	GTG ...	VLW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC
371055	132	CTG ...	LRL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC
377825	72	GTG ...	VET ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, R1E, Spleen_B_cell
367932	150	ATG ...	MVL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Downstream Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
12591	180	GTG ...	VAL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, NSC
1495399	153	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
12588	174	CTG ...	LPV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, NSC
368563	33	CTG ...	LPT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
693620	66	ATG ...	MHE ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC
377010	36	CTG ...	LVC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, R1E, Spleen_B_cell, v6-5
378368	99	CTG ...	LPQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
372905	141	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC
12351	42	GTG ...	VHT ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
477339	72	GTG ...	VVG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, Spleen_B_cell
377514	63	GTG ...	VHH ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, R1E, Spleen_B_cell

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