Transcript 354673

Transcript

ID CARD

MetamORF ID

354673

ENSMUST00000077037

Name

Pcbp2-201

Strand

Biotype

protein_coding

Start-end positions

102470632-102500059

CDS Start-stop positions

102473334-102498525

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:18521

Aliases

alphaCP-2,
AW412548, ENSMUSG00000056851, Hnrpx,
MGI:108202, NCBI:18521, OFF:Pcbp2,
Pcbp2

Chr 15

ORFs

55 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
32809	78	CTG ...	LAF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, Spleen_B_cell
1180961	48	AGG ...	RGS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
948462	51	AGG ...	RLP ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
362226	42	GTG ...	VAW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
947784	105	ATA ...	IVQ ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
31721	63	CTG ...	LAF ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Spleen_B_cell
473471	147	TTG ...	LFR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
31554	60	CTG ...	LIG ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Spleen_B_cell
948638	36	ATC ...	IQL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
32746	57	TTG ...	LSV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, Spleen_B_cell
355319	60	CTG ...	LRE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Spleen_B_cell
1182469	42	ATA ...	IPF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
32710	192	ATG ...	MSL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, C2C12, E14, MEF, Spleen_B_cell
949933	69	ATC ...	IQL ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
32470	66	TTG ...	LLA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
355438	48	GTG ...	VTK ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, Liver, MEF, Spleen_B_cell
471114	30	CTG ...	LPA ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
32415	93	GTG ...	VHV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Spleen_B_cell
789840	42	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
32134	96	GTG ...	VVH ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
32983	99	CTG ...	LSG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell
469962	39	CTG ...	LDL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
1184503	33	AAG ...	KDS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
31697	36	GTG ...	VSN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell
357849	51	ATG ...	MHL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Spleen_B_cell
1184088	150	AGA ...	RVQ ...	Ribo-seq	AGA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
470224	33	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Spleen_B_cell
32578	120	ATG ...	MRS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Spleen_B_cell
32834	51	GTG ...	VSN ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Spleen_B_cell
361412	45	CTG ...	LLK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
1184507	42	ATA ...	IPF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
32001	66	GTG ...	VRA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
31326	42	TTG ...	LSV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
1181952	120	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1184217	117	ATA ...	ICS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
366487	45	CTG ...	LLK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
1700721	60	TTG ...	LFF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
33030	66	ATG ...	MSG ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14, Spleen_B_cell
357143	36	TTG ...	LTT ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, C2C12, E14, Liver, MEF, Spleen_B_cell
1700582	33	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
357875	36	CTG ...	LHN ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Spleen_B_cell
30974	84	TTG ...	LQT ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
33155	81	TTG ...	LLA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell
31625	102	CTG ...	LGR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Spleen_B_cell
948407	72	AAG ...	KGI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
31594	84	CTG ...	LSG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell
366798	51	ATG ...	MHL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Spleen_B_cell
1183459	33	AAG ...	KDS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1180759	102	ATA ...	ICS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1181339	57	AGG ...	RQR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1185050	135	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1675993	30	CTG ...	LFT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
947764	96	CTG ...	LPV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain, MEF
949168	66	AGG ...	RWH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC
1179923	36	AGG ...	RFG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14

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