Transcript 34661 | MetamORF

Transcript

ID CARD

MetamORF ID

34661

ENSMUST00000086267

Name

Fam129a-201

Strand

Biotype

processed_transcript

Start-end positions

151677167-151719342

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:63913

Aliases

AI256368,
AU019833, ENSMUSG00000026483, Fam129a,
MGI:2137237, NCBI:63913, Niban,
Niban1, OFF:Niban1

Chr 1

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
776046	36	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
478928	36	ATG ...	MSS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
831543	87	CTG ...	LVE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, v6-5
798699	126	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1629076	30	ATG ...	MTE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1135819	30	GTG ...	VAG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
34660	66	CTG ...	LKG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Testis
800818	72	CTG ...	LST ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E, v6-5
1047387	39	ATG ...	MSM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
769921	75	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
770495	84	GTG ...	VED ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, v6-5
774490	195	GTG ...	VAQ ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, v6-5
1044240	48	ATG ...	MIL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
769908	99	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1043265	72	TTG ...	LVW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
775939	36	TTG ...	LSV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
785738	264	GTG ...	VTV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, v6-5
1049947	144	GTG ...	VFT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1058471	48	ATG ...	MNS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
931768	69	AGG ...	RVP ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
769785	168	GTG ...	VLG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, v6-5
824948	114	GTG ...	VME ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
783365	78	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
794303	165	CTG ...	LGG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, v6-5
772217	117	CTG ...	LVM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil

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