Transcript 343300

Transcript

ID CARD

MetamORF ID

343300

ENSMUST00000167459

Name

Mbnl2-202

Strand

Biotype

protein_coding

Start-end positions

120275669-120431697

CDS Start-stop positions

120325239-120428949

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:105559

Aliases

1110002M11Rik,
AI047808, AI837313, AI849185,
AL118326, ENSMUSG00000022139, MBLL,
Mbnl2, MGI:2145597, mKIAA4072,
NCBI:105559, OFF:Mbnl2, R75232

Chr 14

ORFs

79 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
350578	72	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
344449	63	CTG ...	LLK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	sORF Upstream	3T3, MEF, NSC
353005	120	CTG ...	LQL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF
679830	48	CTG ...	LQQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
343299	84	CTG ...	LLT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	3T3, Brain, MEF, v6-5
347228	42	TTG ...	LIS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF
351016	111	CTG ...	LSL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF
679537	39	GTG ...	VSP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
345987	66	TTG ...	LKK ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
352791	66	TTG ...	LPS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
350692	69	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
347704	102	GTG ...	VAD ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Spleen_B_cell, v6-5
678716	39	ATG ...	MQV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
29046	45	TTG ...	LWL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver, MEF, v6-5
351622	84	ATG ...	MGK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF
349033	54	TTG ...	LPS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
29506	60	GTG ...	VST ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Liver, MEF, v6-5
345913	99	ATG ...	MEC ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Downstream sORF	3T3, Brain, Glioma, Liver, MEF, MESC, v6-5
680227	63	CTG ...	LQQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
350364	144	CTG ...	LLA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, MEF
347020	99	GTG ...	VLF ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
351662	159	TTG ...	LFP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
421153	216	AGG ...	RDG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
347562	75	CTG ...	LGA ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, C2C12, MEF, Spleen_B_cell, v6-5
351044	63	TTG ...	LRS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF
1613724	72	CTG ...	LYM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
345249	108	GTG ...	VYL ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF, Spleen_B_cell
351391	171	GTG ...	VEK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF
347612	30	ATG ...	MLE ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
349480	93	CTG ...	LKV ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF
678986	138	CTG ...	LQL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
28970	105	TTG ...	LHG ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	sORF Upstream	3T3, Brain, MEF, Spleen_B_cell, v6-5
344633	45	CTG ...	LLV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF
466652	102	CTG ...	LQN ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Spleen_B_cell
348778	99	CTG ...	LHT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
352772	99	TTG ...	LGL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
351632	90	CTG ...	LYM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF
353625	180	CTG ...	LRS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
349872	126	GTG ...	VEK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF
353803	207	CTG ...	LHT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
674806	30	ATG ...	MRL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
351652	135	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1612830	66	ATG ...	MGK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
679604	69	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
421129	222	ATA ...	INR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, E14
28723	81	ATG ...	MRW ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	sORF Upstream	Brain, E14, MEF, Spleen_B_cell, v6-5
786588	105	TTG ...	LLH ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
347587	111	CTG ...	LDW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, Brain, MEF
353795	81	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
352158	96	CTG ...	LIN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
1614004	81	TTG ...	LGL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF
347405	54	TTG ...	LRL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF
675143	156	GTG ...	VTD ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF Upstream	3T3, MEF
345866	78	TTG ...	LRI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Downstream sORF	3T3, Brain, v6-5
346067	72	TTG ...	LDC ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF
344427	30	ATG ...	MEW ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	3T3, Brain, Glioma, Liver, MEF, MESC
947022	246	ACG ...	TAG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
29817	84	ATG ...	MMR ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
344109	39	GTG ...	VAH ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, v6-5
29879	66	ATG ...	MTV ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC, v6-5
945194	201	ACG ...	TAG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
420968	117	ACG ...	TEN ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF Upstream	C2C12
466078	60	GTG ...	VLT ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Spleen_B_cell
29664	51	CTG ...	LPD ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF Upstream	Brain, MEF, Spleen_B_cell, v6-5
347573	30	ATG ...	MPR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Brain, Glioma, Liver, MEF, MESC
676485	45	TTG ...	LLT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
946467	87	ATG ...	MFL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
1614230	90	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
675429	36	TTG ...	LFS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF Upstream	3T3, MEF, NSC
345655	66	CTG ...	LFK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
421086	78	ACG ...	TKE ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
345494	54	GTG ...	VPG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
420977	171	AGG ...	RDG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
421051	177	ATA ...	INR ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, E14
346631	51	CTG ...	LQI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF
466327	84	CTG ...	LQT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Spleen_B_cell
1613284	129	TTG ...	LFP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
352176	105	ATG ...	MFL ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC
1612560	105	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF

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