Transcript 34051 | MetamORF

Transcript

ID CARD

MetamORF ID

34051

ENSMUST00000151250

Name

Pigx-209

Strand

Biotype

processed_transcript

Start-end positions

32084420-32088155

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:72084

Aliases

2010319C14Rik,
ENSMUSG00000023791, MGI:1919334, NCBI:72084,
OFF:Pigx, PIG-X, Pigx

Chr 16

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
372393	114	GTG ...	VGL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
34050	180	TTG ...	LSN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Spleen_B_cell, Testis
35740	264	CTG ...	LMY ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1188627	69	ATC ...	IAI ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
367879	222	GTG ...	VML ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
374870	78	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
371863	72	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
698083	48	ATG ...	MLG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
372343	51	GTG ...	VVN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Spleen_B_cell
373343	126	GTG ...	VQV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
375136	102	GTG ...	VHY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Liver, R1E, Spleen_B_cell
368382	57	CTG ...	LCS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
375950	132	TTG ...	LTV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
369020	87	GTG ...	VCS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
35541	285	GTG ...	VVN ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
697360	45	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
1185591	45	AAG ...	KME ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
35624	192	TTG ...	LKS ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, R1E, Spleen_B_cell, Testis, v6-5
372704	108	CTG ...	LTI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
35191	234	TTG ...	LKC ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Neutrophil, R1E, Testis, v6-5
370673	30	CTG ...	LMY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	Liver, MEF, R1E, Spleen_B_cell
1146758	45	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E

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