Transcript 339827

Transcript

ID CARD

MetamORF ID

339827

ENSMUST00000028016

Name

Prrc2c-201

Strand

Biotype

protein_coding

Start-end positions

162673402-162740550

CDS Start-stop positions

162673402-162724815

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:226562

Aliases

1810043M20Rik,
9630039I18Rik, A630006J20, Bat2d,
Bat2d1, Bat2l2, E130112L15Rik,
ENSMUSG00000040225, MGI:1913754, mKIAA1096,
NCBI:226562, OFF:Prrc2c, Prrc2c,
Prrc3

Chr 1

ORFs

69 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
326265	105	ATG ...	MGY ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
655448	66	CTG ...	LLG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1647606	33	ATG ...	MKV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
452309	108	GTG ...	VRV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1345730	30	CTG ...	LVP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1637495	42	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
684607	93	TTG ...	LLA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
706804	33	CTG ...	LRK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
447120	234	ATG ...	MGV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
696377	123	CTG ...	LCP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
498460	57	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
339826	66	TTG ...	LQH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
472746	225	GTG ...	VAE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
429173	84	GTG ...	VAH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
90482	54	CTG ...	LLT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
488362	90	ATG ...	MLR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
461913	126	CTG ...	LPE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
744004	54	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
647978	42	TTG ...	LLE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
460597	168	TTG ...	LYG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
31476	81	TTG ...	LVF ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
505617	141	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
470050	54	ATG ...	MKY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
747970	120	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
18979	69	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, R1E
702473	138	GTG ...	VCF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
130823	174	ATG ...	MQH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
505787	78	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	MEF
139062	186	ATG ...	MGR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
690474	75	GTG ...	VVS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
475289	156	ATG ...	MCL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
24085	87	ATG ...	MSF ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, R1E
456048	63	ATG ...	MSR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
581379	123	ATG ...	MAF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
127085	294	TTG ...	LYA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E
298768	81	ATG ...	MQR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
457633	93	TTG ...	LRL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1044298	30	CTG ...	LKL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
743287	57	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1050185	45	CTG ...	LGM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
36109	150	TTG ...	LAV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
469025	54	CTG ...	LLA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
491752	180	TTG ...	LYG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	MEF
141694	261	GTG ...	VSG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E
467122	129	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
664308	96	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
415387	111	ATG ...	MMA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
728754	39	ATG ...	MKS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
743705	171	CTG ...	LEI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
485343	216	GTG ...	VVE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
51008	63	CTG ...	LIR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, R1E
1641663	108	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
641914	102	ATG ...	MVQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
677060	30	GTG ...	VEH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
749180	126	ATG ...	MDL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
743257	135	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
518790	198	GTG ...	VSI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
713387	78	ATG ...	MVV ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
678439	105	CTG ...	LKG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
468972	87	TTG ...	LFP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
482891	102	ATG ...	MDL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
540116	63	CTG ...	LGH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
732969	138	ATG ...	MMK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
538430	39	ATG ...	MQG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
485753	63	CTG ...	LIT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
459882	111	GTG ...	VFL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
540341	114	ATG ...	MMM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1646999	45	ATG ...	MLK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
323783	90	TTG ...	LEK ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E

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