Transcript 33791 | MetamORF

Transcript

ID CARD

MetamORF ID

33791

ENSMUST00000006293

Name

Crkl-201

Strand

Biotype

protein_coding

Start-end positions

17451987-17486255

CDS Start-stop positions

17452478-17483795

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:12929

Aliases

1110025F07Rik,
AA589403, AI325100, Crkl,
Crkol, ENSMUSG00000006134, MGI:104686,
NCBI:12929, OFF:Crkl, snoop

Chr 16

ORFs

77 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
694960	108	TTG ...	LLL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
693273	294	CTG ...	LGK ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14
1187125	135	AGG ...	RRP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1494635	39	ATG ...	MLK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
697904	120	CTG ...	LLS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14
1146470	57	ATG ...	MIF ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC, R1E, v6-5
33946	36	ATG ...	MLR ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Testis, v6-5
377018	48	GTG ...	VLM ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, R1E, Spleen_B_cell, v6-5
1186791	42	AGG ...	RRA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1187197	87	AAG ...	KPE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
477431	78	TTG ...	LQK ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1540552	54	ATG ...	MGR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
477828	126	CTG ...	LGQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, R1E, Spleen_B_cell, v6-5
693915	33	GTG ...	VPA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, NSC
373851	72	ATG ...	MYG ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
477652	225	ATG ...	MEI ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, Spleen_B_cell, v6-5
377478	90	ATG ...	MDL ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
696795	105	TTG ...	LLW ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
691896	72	CTG ...	LLG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil
477575	42	ATG ...	MTR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, NSC, R1E, Spleen_B_cell, v6-5
952471	111	ATT ...	ILL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
34335	72	GTG ...	VRR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Testis
368725	57	GTG ...	VEC ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
474357	213	ATG ...	MEI ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, Spleen_B_cell, v6-5
474266	162	ATG ...	MLN ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, Spleen_B_cell, v6-5
478112	174	ATG ...	MLN ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, Spleen_B_cell, v6-5
476205	174	CTG ...	LLM ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, Spleen_B_cell, v6-5
477926	138	TTG ...	LPV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, R1E, Spleen_B_cell, v6-5
477788	234	ATG ...	MES ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
477745	186	CTG ...	LLM ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, Spleen_B_cell, v6-5
695790	30	GTG ...	VTA ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, v6-5
34298	33	GTG ...	VAE ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Testis, v6-5
1185880	111	AGG ...	RLP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1188729	63	AGG ...	RRD ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1356732	87	CTG ...	LPR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
952041	288	AAG ...	KTA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
693004	162	CTG ...	LYS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14
475681	126	TTG ...	LPV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, R1E, Spleen_B_cell, v6-5
693074	93	GTG ...	VFP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, MEF
475374	189	ATG ...	MAS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, Spleen_B_cell, v6-5
693209	87	TTG ...	LPS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14
473905	78	ATG ...	MDL ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1185413	60	AAG ...	KRA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
475179	36	GTG ...	VLM ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
1356591	177	CTG ...	LVH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
33790	33	CTG ...	LRG ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
477255	201	ATG ...	MAS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, Spleen_B_cell, v6-5
370836	42	TTG ...	LIL ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, NSC, R1E, v6-5
476361	168	ATG ...	MRM ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, Spleen_B_cell, v6-5
377779	84	CTG ...	LSL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
694920	264	TTG ...	LLE ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14
697991	210	CTG ...	LWS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC
695599	153	GTG ...	VEP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14
691859	39	GTG ...	VLR ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, R1E
1185915	63	ATC ...	IHT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
696410	72	GTG ...	VQE ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, v6-5
474716	114	CTG ...	LGQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, R1E, Spleen_B_cell, v6-5
1495177	36	CTG ...	LKT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
475069	30	ATG ...	MTR ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
474591	222	ATG ...	MES ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, NSC, Spleen_B_cell, v6-5
792536	42	ATG ...	MML ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, NSC
477831	180	ATG ...	MRM ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, Spleen_B_cell, v6-5
696591	87	GTG ...	VSR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
476400	66	TTG ...	LQK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell, v6-5
694816	114	ATG ...	MYC ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
697100	147	CTG ...	LRS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14
697366	102	CTG ...	LWL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
372614	48	CTG ...	LGM ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, v6-5
1146262	60	GTG ...	VVE ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
476909	72	CTG ...	LSL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
697336	174	CTG ...	LEP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14
693644	216	TTG ...	LRL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14
697266	261	TTG ...	LEC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
697239	93	TTG ...	LGA ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
476349	171	GTG ...	VQA ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
696068	51	CTG ...	LKS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
792710	117	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E

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