Transcript 3376 | MetamORF

Transcript

ID CARD

MetamORF ID

3376

ENSMUST00000056889

Name

Chd4-201

Strand

Biotype

protein_coding

Start-end positions

125095981-125130591

CDS Start-stop positions

125097166-125130001

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:107932

Aliases

9530019N15Rik,
AA617397, BC005710, Chd4,
D6Ertd380e, ENSMUSG00000063870, MGI:1344380,
Mi-2beta, mKIAA4075, NCBI:107932,
OFF:Chd4

Chr 6

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1516076	78	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
527942	75	GTG ...	VPS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
1247402	66	ATA ...	IFS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1243139	69	ATA ...	IRP ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1516153	72	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
907227	90	AGG ...	REP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1561547	39	GTG ...	VTH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1246561	72	TTG ...	LLM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
526280	90	GTG ...	VTR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
583121	87	ATG ...	MGL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1514005	45	GTG ...	VAC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
910798	150	AAG ...	KIS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
907538	129	ATG ...	MCH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
910518	96	ATC ...	ILR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
907631	72	ACG ...	TIR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
3542	153	GTG ...	VRA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
583338	96	CTG ...	LGQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
529116	159	ATG ...	MVM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
525878	93	GTG ...	VIP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
527396	96	ATG ...	MWV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
908609	108	ATT ...	ICV ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
525089	42	TTG ...	LRG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
527460	168	CTG ...	LLW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
1248699	72	AGA ...	RRE ...	Ribo-seq	AGA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
3375	132	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Skin_tumor
194560	87	GTG ...	VLS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
906918	105	AGG ...	RIY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
911245	276	GTG ...	VIP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1246173	45	ATC ...	IET ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
529114	57	ATG ...	MSS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
528528	153	ATG ...	MRQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Spleen_B_cell
1515779	99	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
910485	156	ATG ...	MIK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, v6-5
1516381	126	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
526567	30	ATG ...	MWY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
525645	165	CTG ...	LWM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
1243750	42	AAG ...	KWL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
907711	138	AGG ...	RTI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
910925	165	ATC ...	IFE ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
576949	81	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1248120	102	AGG ...	REK ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
907885	96	AAG ...	KTA ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1248156	66	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
910724	144	AAG ...	KNL ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
529953	84	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
575846	120	ATG ...	MIW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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