Transcript 333641

Transcript

ID CARD

MetamORF ID

333641

ENSMUST00000137064

Name

Auh-210

Strand

Biotype

nonsense_mediated_decay

Start-end positions

52835119-52919232

CDS Start-stop positions

52836094-

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:11992

Aliases

Auh,
C77140, ENSMUSG00000021460, MGI:1338011,
NCBI:11992, OFF:Auh, W91705

Chr 13

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
339981	102	GTG ...	VGL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	3T3, Brain
335185	33	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	Brain
463773	33	TTG ...	LTV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	NMD sORF	3T3
334674	84	GTG ...	VLE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	3T3, Brain
333640	69	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
339451	39	CTG ...	LDL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, Brain
672350	57	CTG ...	LEG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF	3T3
335525	96	TTG ...	LIS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	3T3, Brain
339702	84	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	NMD sORF	3T3
335382	39	TTG ...	LKQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Brain
998479	141	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
463191	45	CTG ...	LPE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD sORF	3T3
339763	57	CTG ...	LQK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
671989	159	CTG ...	LAK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, Brain

Export data