Transcript 33354 | MetamORF

Transcript

ID CARD

MetamORF ID

33354

ENSMUST00000023507

Name

Gsk3b-201

Strand

Biotype

protein_coding

Start-end positions

38089001-38246084

CDS Start-stop positions

38090526-38240569

CDS Relative positions

Sequences

Transcript sequence

ACA ...

Genome browsers

UCSC

Gene

NCBI:56637

Aliases

7330414F15Rik,
8430431H08Rik, C86142, ENSMUSG00000022812,
GSK-3, GSK-3beta, GSK3,
Gsk3b, MGI:1861437, NCBI:56637,
OFF:Gsk3b

Chr 16

ORFs

65 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
692256	81	GTG ...	VSP ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14
700449	72	CTG ...	LEN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
1186219	78	ATA ...	ISI ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
373560	87	TTG ...	LVW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
374532	81	CTG ...	LKG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, Spleen_B_cell
370335	96	ATG ...	MDH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1002917	120	CTG ...	LGS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
372928	54	CTG ...	LEN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
372327	75	GTG ...	VQS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1003103	51	TTG ...	LRR ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
694574	138	CTG ...	LRR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14
699145	102	GTG ...	VWY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
378414	120	TTG ...	LEM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
34538	45	ATG ...	MRA ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
691790	54	CTG ...	LAR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
373083	159	ATG ...	MSP ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, E14, R1E
374985	63	TTG ...	LPG ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF Upstream	Brain, E14, MEF
1539876	78	ATG ...	MGE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
371674	246	CTG ...	LGR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, Brain
699891	105	TTG ...	LVW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
1146277	42	ATG ...	MYG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
693680	42	CTG ...	LTG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
34247	114	ATG ...	MGS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, E14, Spleen_B_cell, Testis
376184	114	ATG ...	MDH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1148988	39	ATG ...	MSS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
1002681	78	GTG ...	VQP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC
1145989	36	CTG ...	LGT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1187024	93	ATG ...	MSN ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
699460	87	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
373695	102	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
372860	129	GTG ...	VHI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1002763	39	TTG ...	LRE ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, NSC, v6-5
794013	72	CTG ...	LAG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
699987	81	TTG ...	LEV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
952235	69	AAG ...	KRL ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
373075	60	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1187338	99	ACG ...	TDG ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF Upstream	E14
372666	33	CTG ...	LQA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1003357	45	ATG ...	MFH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
377965	78	GTG ...	VIL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
1187179	69	ACG ...	TKS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
952061	186	AGG ...	RDG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
374543	270	TTG ...	LCR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain
367962	30	TTG ...	LEP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1187408	72	AAG ...	KPR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
368178	219	GTG ...	VPG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
696913	249	CTG ...	LSK ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, E14
695930	300	CTG ...	LTG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
697054	48	CTG ...	LFS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
696563	66	ATG ...	MFR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
372241	84	GTG ...	VWY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
700012	60	TTG ...	LPS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
696685	60	TTG ...	LVI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
376088	237	GTG ...	VTK ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain, E14
1002734	168	CTG ...	LVP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1494925	99	GTG ...	VIQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, NSC
33353	48	ATG ...	MAA ...	Ribo-seq	ATG	optimal	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, NSC, R1E, Spleen_B_cell, Testis
693010	96	ATG ...	MRS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1539737	96	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
371702	111	ATG ...	MNC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
367575	42	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1495627	36	CTG ...	LQA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
952960	150	ACG ...	TEA ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
367866	66	TTG ...	LES ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
1540450	48	TTG ...	LHC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF

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