Transcript 33304 | MetamORF

Transcript

ID CARD

MetamORF ID

33304

ENSMUST00000132320

Name

Eif4g1-210

Strand

Biotype

retained_intron

Start-end positions

20678276-20692881

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:208643

Aliases

E030015G23Rik,
eIF-4-gamma 1, eIF-4G 1, eIF-4G1,
Eif4g1, eIF4GI, ENSMUSG00000045983,
MGI:2384784, NCBI:208643, OFF:Eif4g1

Chr 16

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34198	57	CTG ...	LIT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
35156	171	CTG ...	LMK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
33403	66	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34604	138	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34294	195	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34522	228	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
33800	129	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34418	168	TTG ...	LKM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
34562	90	GTG ...	VPK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
34627	75	GTG ...	VAL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
34581	228	CTG ...	LFR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
33924	150	CTG ...	LAI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34827	198	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34182	75	TTG ...	LNR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34631	96	GTG ...	VSV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
34608	153	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34743	57	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
33303	273	TTG ...	LSR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34714	183	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
34428	144	GTG ...	VVK ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
34769	141	GTG ...	VKE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
34726	75	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34710	252	CTG ...	LKE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
34434	204	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34386	153	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
33608	159	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
35075	213	GTG ...	VDP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
34107	111	TTG ...	LAE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34478	129	CTG ...	LYE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34635	48	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34738	99	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
34027	288	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
33504	135	GTG ...	VPT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis

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