Transcript 332929

Transcript

ID CARD

MetamORF ID

332929

ENSMUST00000133100

Name

Tpmt-204

Strand

Biotype

retained_intron

Start-end positions

47039698-47043144

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:22017

Aliases

AW106912,
ENSMUSG00000021376, MGI:98812, NCBI:22017,
OFF:Tpmt, Tpmt

Chr 13

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
26736	45	GTG ...	VTR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Liver, R1E
993071	72	CTG ...	LRV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver
847600	48	GTG ...	VDC ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver
1135443	117	CTG ...	LLK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
339416	30	ATG ...	MLR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
993235	108	ATG ...	MFL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
26576	69	CTG ...	LED ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Liver, R1E
848054	69	CTG ...	LET ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	Liver, R1E
332928	36	TTG ...	LST ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, Liver
993344	102	TTG ...	LDT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver
993023	102	CTG ...	LND ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
332953	33	CTG ...	LML ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1136948	114	TTG ...	LKK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver

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