Transcript 324283

Transcript

ID CARD

MetamORF ID

324283

ENSMUST00000179265

Name

Hectd1-202

Strand

Biotype

protein_coding

Start-end positions

51743722-51829536

CDS Start-stop positions

51744521-51827491

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:207304

Aliases

A630086P08Rik,
AI844876, b2b327Clo, ENSMUSG00000035247,
Hectd1, MGI:2384768, NCBI:207304,
OFF:Hectd1, opm

Chr 12

ORFs

85 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1608206	135	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
9906	75	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1606555	132	GTG ...	VML ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
330667	81	TTG ...	LEL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF, Neutrophil
9853	90	ATG ...	MTR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
663075	156	GTG ...	VCL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
663849	99	ATG ...	MGK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1608175	114	TTG ...	LNA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
662045	72	CTG ...	LKM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Neutrophil
1608077	105	ATG ...	MDG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
10064	51	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1607727	66	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
664092	42	TTG ...	LFF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
662426	78	GTG ...	VLD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
660551	48	ATG ...	MWN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1604930	96	ATG ...	MDG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
661557	66	ATG ...	MDR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
666200	60	CTG ...	LLG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
1608162	90	ATG ...	MTH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
320838	75	CTG ...	LAM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
1605380	42	TTG ...	LKS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
9961	69	CTG ...	LTR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1605372	195	ATG ...	MYS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1489670	36	CTG ...	LWI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
663687	171	ATG ...	MSP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1607085	126	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
664045	132	TTG ...	LTS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
781493	114	CTG ...	LRF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1607817	114	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
663284	165	ATG ...	MKD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1607959	138	ATG ...	MLQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1131281	126	CTG ...	LGN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1606235	105	ATG ...	MAV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
458841	33	TTG ...	LMT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
661602	150	TTG ...	LIP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1605378	45	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
780584	60	CTG ...	LIR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
997574	30	ATG ...	MLV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1131161	48	CTG ...	LYA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
660837	30	ATG ...	MLH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1132713	57	TTG ...	LAR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
1133630	48	CTG ...	LYA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1606138	36	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
940342	66	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
662941	180	GTG ...	VHY ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1132185	60	TTG ...	LWK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1607973	60	TTG ...	LTQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1133039	150	CTG ...	LVC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1132722	63	TTG ...	LPI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, v6-5
10008	87	ATG ...	MTR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1607477	126	CTG ...	LAK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
9701	54	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
9693	93	ATG ...	MMT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1608017	135	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
663043	75	CTG ...	LDL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1131939	69	ATG ...	MYS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
10041	72	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
662141	168	GTG ...	VMK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
663503	36	CTG ...	LVV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
1605041	180	GTG ...	VDC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1489450	48	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
461315	60	TTG ...	LVR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil
324282	30	ATG ...	MFL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil
665967	48	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
327096	66	ATG ...	MRR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil
26127	75	CTG ...	LDR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF, Neutrophil, v6-5
665452	78	GTG ...	VQI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
664204	108	TTG ...	LKD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
10053	90	ATG ...	MMT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
9910	78	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1132669	72	TTG ...	LEV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1607335	141	GTG ...	VML ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1605717	54	GTG ...	VDR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1489156	48	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
459655	69	GTG ...	VAT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
330989	96	CTG ...	LPA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Neutrophil
10083	66	CTG ...	LTR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
780249	66	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil
1606577	72	ATG ...	MEN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1605004	60	TTG ...	LNA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
664442	36	ATG ...	MTH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
666065	39	CTG ...	LFG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil
665233	48	TTG ...	LIL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1604824	129	ATG ...	MLQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
9793	33	TTG ...	LNL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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