Transcript 323509

Transcript

ID CARD

MetamORF ID

323509

ENSMUST00000076260

Name

Itgb1bp1-201

Strand

Biotype

protein_coding

Start-end positions

21269806-21286237

CDS Start-stop positions

21270886-21279471

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:16413

Aliases

AI449260,
AU019480, ENSMUSG00000062352, Icap1,
Itgb1bp1, MGI:1306802, NCBI:16413,
OFF:Itgb1bp1

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
459917	54	CTG ...	LET ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, E14, MEF, Spleen_B_cell, v6-5
458935	54	ATG ...	MQA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
325534	57	TTG ...	LVP ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
324822	69	TTG ...	LED ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
24748	60	GTG ...	VKD ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver, MEF, Spleen_B_cell, v6-5
457921	63	CTG ...	LDH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	3T3, Spleen_B_cell
458330	33	CTG ...	LRH ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, MEF, Spleen_B_cell, v6-5
25266	75	CTG ...	LDR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, Liver, MEF, Spleen_B_cell, v6-5
25600	63	ATG ...	MVK ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, Liver, MEF, Spleen_B_cell, v6-5
327943	45	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
460095	30	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
330953	216	TTG ...	LFH ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, MEF, v6-5
327190	60	ATG ...	MLV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
667341	60	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
330698	84	TTG ...	LED ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
323508	36	CTG ...	LAK ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, MEF, Spleen_B_cell
327733	66	ATG ...	MES ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
324032	51	TTG ...	LCL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
327240	84	CTG ...	LWI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
327025	54	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
327647	120	TTG ...	LFH ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Spleen_B_cell, v6-5
330195	99	CTG ...	LWI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
460207	102	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell

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