Transcript 32329 | MetamORF

Transcript

ID CARD

MetamORF ID

32329

ENSMUST00000061875

Name

Zfp622-201

Strand

Biotype

protein_coding

Start-end positions

25984366-25998482

CDS Start-stop positions

25984550-25997294

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:52521

Aliases

1110033B05Rik,
D15Ertd806e, ENSMUSG00000052253, MGI:1289282,
NCBI:52521, OFF:Zfp622, Zfp622,
Znf622, ZPR9

Chr 15

ORFs

50 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
473368	144	ATG ...	MVT ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
472966	72	GTG ...	VGG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
469492	51	TTG ...	LLP ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
1181540	87	ATC ...	IKM ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
360025	78	ATG ...	MDW ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, v6-5
472000	171	GTG ...	VRE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E, Spleen_B_cell, v6-5
1180808	105	ATA ...	ICA ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
472788	183	GTG ...	VRE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, R1E, Spleen_B_cell, v6-5
357259	90	TTG ...	LIP ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, v6-5
1181879	87	ATT ...	IPM ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
473254	135	CTG ...	LPW ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
684029	54	GTG ...	VCL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, v6-5
355389	33	GTG ...	VNG ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
1180581	69	ATC ...	ILL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
682384	63	CTG ...	LSL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
469894	57	CTG ...	LVC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
691450	123	TTG ...	LQT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, R1E, v6-5
686346	66	CTG ...	LLS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1181417	33	ATT ...	IWL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
789447	60	ATG ...	MVT ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E, v6-5
685402	36	GTG ...	VGE ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF
473341	141	GTG ...	VTL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E, Spleen_B_cell, v6-5
1700506	39	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
473464	111	GTG ...	VVR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, R1E, Spleen_B_cell, v6-5
1183114	66	AGG ...	RNE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
356800	30	ATG ...	MQR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
469871	99	GTG ...	VVR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell, v6-5
1181353	81	AGG ...	RCH ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1144953	36	GTG ...	VDG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
1143233	57	TTG ...	LRP ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
471353	60	CTG ...	LLV ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
356289	81	ATG ...	MDA ...	Ribo-seq	ATG	strong	8	sORFs_org_Mouse Johnstone2016	Downstream Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
32328	42	CTG ...	LAV ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell, Testis, v6-5
688606	78	GTG ...	VLA ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, v6-5
1183436	48	AGG ...	REV ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
358590	39	ATG ...	MQK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC
1181946	42	AGG ...	RMQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
790641	57	GTG ...	VTL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, R1E, v6-5
790558	81	ATG ...	MMD ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, v6-5
1184413	51	ATA ...	IPS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1181754	51	CTG ...	LPW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
470190	60	GTG ...	VGG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
681650	75	TTG ...	LAK ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, v6-5
687501	51	ATG ...	MRK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, NSC, v6-5
789988	90	ATG ...	MTK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E, v6-5
355226	57	CTG ...	LEW ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, v6-5
1181408	117	ACG ...	TGH ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
789856	66	GTG ...	VRT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, v6-5
473629	174	ATG ...	MTK ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
687419	81	TTG ...	LVL ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, v6-5

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