Transcript 322106

Transcript

ID CARD

MetamORF ID

322106

ENSMUST00000179908

Name

Rab10os-206

Strand

Biotype

antisense_RNA

Start-end positions

3235832-3239234

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:74173

Aliases

1700012B15Rik,
1810036A22Rik, ENSMUSG00000079179, MGI:1921423,
NCBI:74173, OFF:Rab10os, Rab10os

Chr 12

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
325357	39	ATG ...	MTP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Overlapping sORF	B_cell
322187	69	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Overlapping sORF	Brain
330250	231	ATG ...	MRV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Overlapping sORF	Brain
25801	57	GTG ...	VRD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Overlapping sORF	B_cell
24560	30	GTG ...	VSD ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Overlapping sORF	B_cell, Brain
329303	282	ATG ...	MGG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Overlapping sORF	Brain
779534	36	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Overlapping sORF	B_cell
779662	33	CTG ...	LCE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF	B_cell
322458	42	GTG ...	VMT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Overlapping sORF	B_cell, Brain
24698	48	ATG ...	MSA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Overlapping sORF	B_cell, BMDC
780072	60	TTG ...	LVP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Overlapping sORF	B_cell, BMDC

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