Transcript 31953 | MetamORF

Transcript

ID CARD

MetamORF ID

31953

ENSMUST00000189951

Name

Hdlbp-210

Strand

Biotype

retained_intron

Start-end positions

93428569-93445652

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:110611

Aliases

1110005P14Rik,
AA960365, AI118566, D1Ertd101e,
ENSMUSG00000034088, Hdlbp, MGI:99256,
NCBI:110611, OFF:Hdlbp

Chr 1

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
847752	75	ATG ...	MTP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver, v6-5
134049	96	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
468168	237	GTG ...	VKK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Spleen_B_cell, v6-5
855194	81	CTG ...	LVL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver
482283	132	CTG ...	LAK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
481835	189	CTG ...	LQE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
846282	54	TTG ...	LVR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
487612	183	GTG ...	VGE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell, v6-5
451106	237	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
357515	120	GTG ...	VNK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
958791	138	TTG ...	LTQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
476280	99	TTG ...	LRS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
362604	63	GTG ...	VCG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
964378	33	AAG ...	KWA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
326943	72	GTG ...	VPK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver
856760	78	GTG ...	VLT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Liver
488299	87	TTG ...	LIQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
858486	105	CTG ...	LQP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Liver, v6-5
303898	99	ATG ...	MLL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, v6-5
324617	93	TTG ...	LGQ ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, v6-5
454431	51	TTG ...	LNR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
7602	33	TTG ...	LAK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
460794	102	CTG ...	LIT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
307180	114	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
443594	177	CTG ...	LER ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
854007	132	CTG ...	LGF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
470046	144	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
472312	42	CTG ...	LLR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell, v6-5
459173	51	CTG ...	LEF ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell, v6-5
12449	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
465735	138	CTG ...	LPY ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, Spleen_B_cell, v6-5
949674	36	ACG ...	TDR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
701168	84	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
934163	66	ATC ...	IVC ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
521443	252	GTG ...	VFH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
451528	231	GTG ...	VEK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell, v6-5
31952	120	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
355733	60	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver
1122676	48	CTG ...	LAP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
99144	135	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
482484	129	TTG ...	LER ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell

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