Transcript 317811

Transcript

ID CARD

MetamORF ID

317811

ENSMUST00000190733

Name

Clasp1-219

Strand

Biotype

nonsense_mediated_decay

Start-end positions

118389446-118607165

CDS Start-stop positions

118419724-118471798

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:76707

Aliases

1700030C23Rik,
5730583A19Rik, B130045P17Rik, Clasp1,
CLASP1alpha, ENSMUSG00000064302, MGI:1923957,
NCBI:76707, OFF:Clasp1

Chr 1

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
395654	57	CTG ...	LIP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
397746	72	ATG ...	MKY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
397293	180	CTG ...	LDY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
336774	45	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
327231	126	CTG ...	LYH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
317810	240	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
321143	69	TTG ...	LKR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
403533	81	CTG ...	LLN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain

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