Transcript 31461 | MetamORF

Transcript

ID CARD

MetamORF ID

31461

ENSMUST00000018186

Name

Cyb5r3-201

Strand

Biotype

protein_coding

Start-end positions

83153494-83172592

CDS Start-stop positions

83154550-83172132

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:109754

Aliases

0610016L08Rik,
2500002N19Rik, B5R, C85115,
Cyb5r3, Dia-1, Dia1,
ENSMUSG00000018042, MGI:94893, NCBI:109754,
OFF:Cyb5r3, WU:Cyb5r3

Chr 15

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
32951	99	TTG ...	LNS ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
32751	219	TTG ...	LPS ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
364097	258	CTG ...	LGF ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
361007	48	GTG ...	VRE ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, C2C12, MEF
366062	117	CTG ...	LCR ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, v6-5
33057	240	CTG ...	LTL ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
950094	75	ATT ...	ILL ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
364120	264	CTG ...	LLL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E, Spleen_B_cell
1185064	81	ACG ...	TNI ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
32823	180	TTG ...	LAN ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
32813	147	ATG ...	MAT ...	Ribo-seq	ATG		16	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Testis, v6-5
364918	72	CTG ...	LLA ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, v6-5
947967	33	ATA ...	ISC ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
364719	105	ATG ...	MMT ...	Ribo-seq	ATG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, v6-5
1180307	195	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
949998	81	ACG ...	TTT ...	Ribo-seq	ACG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
1184074	96	AGG ...	RAL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
31460	48	TTG ...	LPS ...	Ribo-seq	TTG	moderate	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1182566	51	ATC ...	IPS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
683572	69	CTG ...	LSS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF
365593	261	GTG ...	VLG ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
32917	111	TTG ...	LET ...	Ribo-seq	TTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
31735	39	GTG ...	VQT ...	Ribo-seq	GTG	weak	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
690707	33	CTG ...	LMP ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, R1E
363173	36	CTG ...	LEG ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
32706	81	ATG ...	MGY ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, Testis, v6-5
364130	54	TTG ...	LPT ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
1184150	39	AAG ...	KPL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
33143	39	TTG ...	LQE ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
32728	222	CTG ...	LLL ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
367142	102	ATG ...	MTR ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, v6-5
691338	30	ATG ...	MPG ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, R1E
366822	90	TTG ...	LWT ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, v6-5

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