Transcript 31228 | MetamORF

Transcript

ID CARD

MetamORF ID

31228

ENSMUST00000139729

Name

Myh9-207

Strand

Biotype

retained_intron

Start-end positions

77765328-77767190

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:17886

Aliases

ENSMUSG00000022443,
Fltn, MGI:107717, Myh9,
Myhn-1, Myhn1, NCBI:17886,
NMHCIIA, NMMHC-A, NMMHC-IIA,
OFF:Myh9, TU72.6

Chr 15

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
948137	63	ACG ...	TTR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
948340	48	ACG ...	TQE ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
947937	39	ATC ...	IKQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
470289	30	CTG ...	LRK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Neutrophil, Spleen_B_cell
1044718	123	ATG ...	MGP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil
948984	78	AGG ...	RTW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
948019	84	AGG ...	RTA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
949852	69	AGG ...	RHT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
471453	99	GTG ...	VFL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
31988	156	CTG ...	LED ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
31227	177	GTG ...	VRE ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
472051	102	CTG ...	LVF ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
947757	111	AAG ...	KKL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
948308	33	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
361598	93	CTG ...	LKD ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
471373	60	ATG ...	MRG ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
949056	48	ATA ...	IRT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
360232	84	CTG ...	LEA ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
949482	141	AAG ...	KQR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
470943	105	CTG ...	LLV ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, MEF, Neutrophil, Spleen_B_cell
687311	69	CTG ...	LHA ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, v6-5
471756	60	TTG ...	LTQ ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
471529	105	CTG ...	LEM ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1044407	90	CTG ...	LQG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil

Export data