Transcript 3111 | MetamORF

Transcript

ID CARD

MetamORF ID

3111

ENSMUST00000134315

Name

Mkln1-204

Strand

Biotype

retained_intron

Start-end positions

31398828-31470889

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:27418

Aliases

A130067F06Rik,
AU015903, BB154892, ENSMUSG00000025609,
MGI:1351638, Mkln1, NCBI:27418,
OFF:Mkln1

Chr 6

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
198415	93	ATG ...	MVR ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
1023302	48	CTG ...	LNW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
70417	198	TTG ...	LGR ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
70739	114	TTG ...	LFG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
203243	51	TTG ...	LMN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
68792	45	CTG ...	LHK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
196646	54	GTG ...	VKI ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
197544	42	CTG ...	LQF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
68300	60	GTG ...	VKE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
70441	156	CTG ...	LKS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
192822	54	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
69596	177	TTG ...	LIL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
192297	111	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
199930	51	TTG ...	LNP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
199020	39	GTG ...	VAL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
70347	171	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
191690	45	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
69262	114	TTG ...	LFN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
206269	33	TTG ...	LMI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
3110	45	CTG ...	LGI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Skin_tumor
69684	57	CTG ...	LPY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain
193598	48	ATG ...	MNR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
70224	144	CTG ...	LQK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
202698	78	TTG ...	LKH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
68216	81	GTG ...	VLK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
583863	33	GTG ...	VDQ ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
67472	78	GTG ...	VAP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
1021720	60	GTG ...	VQP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
202997	66	CTG ...	LFI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
70568	132	TTG ...	LSW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
69097	174	GTG ...	VRN ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
526620	30	GTG ...	VNR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
68916	186	TTG ...	LDS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
195392	60	CTG ...	LLS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
581544	48	GTG ...	VIS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
69278	84	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
199672	51	ATG ...	MLN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
204320	30	ATG ...	MIL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
193789	69	TTG ...	LKG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
191692	84	GTG ...	VPD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
70183	120	CTG ...	LEH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
193964	30	ATG ...	MII ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
200075	48	TTG ...	LNL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
201806	42	CTG ...	LPT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
583934	30	GTG ...	VPA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
206519	36	TTG ...	LEN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain

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