Transcript 31048 | MetamORF

Transcript

ID CARD

MetamORF ID

31048

ENSMUST00000171436

Name

Pacsin2-203

Strand

Biotype

protein_coding

Start-end positions

83375607-83464606

CDS Start-stop positions

83377618-83401926

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:23970

Aliases

AI197433,
ENSMUSG00000016664, MGI:1345153, NCBI:23970,
OFF:Pacsin2, Pacsin2, SdpII

Chr 15

ORFs

67 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
361774	48	ATG ...	MTL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF
364308	156	CTG ...	LSA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, E14, Liver, MEF
421414	180	ACG ...	TGR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
365165	69	ATG ...	MTL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF
690291	117	TTG ...	LER ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF
949237	54	AAG ...	KTL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
362390	174	ATG ...	MRR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
366077	63	CTG ...	LWE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF
363244	150	CTG ...	LTG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
33134	114	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, Liver, Testis
950012	75	ATC ...	ICP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
32883	111	CTG ...	LPP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, Liver, Testis
1182300	54	ATA ...	IKP ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
32048	114	CTG ...	LTP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, Liver, MEF, Testis
950183	51	AAG ...	KCP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
11566	57	GTG ...	VVC ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
470867	75	ATG ...	MSG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
421656	72	ACG ...	TMT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
691327	300	GTG ...	VSR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
471512	48	ATG ...	MHS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
357347	60	CTG ...	LSP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF
361146	105	ATG ...	MPT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
690298	198	TTG ...	LIR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
684822	33	ATG ...	MTM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
684079	36	TTG ...	LTM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
356749	78	ATG ...	MRT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
471805	39	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
684454	63	CTG ...	LNW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14
683472	69	GTG ...	VQR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
32440	93	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, Testis
1184824	39	ACG ...	TAA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
472715	69	GTG ...	VLS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, MEF, Spleen_B_cell
359323	42	CTG ...	LWE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF
421586	51	ACG ...	TMT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
357556	81	TTG ...	LMR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
689502	135	TTG ...	LKR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
366271	192	GTG ...	VKT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain
686097	30	ATG ...	MAT ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
1181184	33	AGG ...	RNR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
359212	141	CTG ...	LMM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
471868	33	CTG ...	LSG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
683565	39	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
32985	123	CTG ...	LEC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, E14, Liver, Testis
683605	36	ATG ...	MKM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
11435	57	ATG ...	MKT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
948552	195	ATC ...	IRP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1182915	54	ATC ...	IEL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
32811	93	CTG ...	LQK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, Liver, Testis
358966	138	ATG ...	MMS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
1044112	30	ATG ...	MNR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
31233	90	CTG ...	LPP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, Liver, Testis
355184	135	CTG ...	LSA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, Liver, MEF
1183734	207	AGG ...	RAG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
949419	30	AAG ...	KCP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
684298	87	TTG ...	LER ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14
33201	81	CTG ...	LSP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Testis
689096	66	ATG ...	MWL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
32192	72	CTG ...	LQK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, Liver, Testis
950367	195	ATC ...	IRP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
472443	48	TTG ...	LRR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver
359271	135	ATG ...	MSL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14
1181387	123	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
360522	186	GTG ...	VSA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
1183553	135	GTG ...	VGP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
31047	102	CTG ...	LEC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, Liver, Testis
690872	213	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
32979	135	CTG ...	LTP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, E14, Liver, MEF, Testis

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