Transcript 308236

Transcript

ID CARD

MetamORF ID

308236

ENSMUST00000155490

Name

Dcakd-205

Strand

Biotype

protein_coding

Start-end positions

102999644-103028304

CDS Start-stop positions

-103000261

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:68087

Aliases

3010024O21Rik,
6720485C15Rik, AI849483, Dcakd,
ENSMUSG00000020935, MGI:1915337, NCBI:68087,
OFF:Dcakd

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
447397	42	CTG ...	LCC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, MEF
888022	36	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Liver
21313	87	CTG ...	LAS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	3T3, E14
20658	78	GTG ...	VPT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	3T3, E14
418863	210	ATT ...	ISQ ...	Ribo-seq	ATT		2	sORFs_org_Mouse	sORF	C2C12, E14
298524	48	ATG ...	MSR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Liver
296144	177	GTG ...	VCQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
1285595	30	AGG ...	RYS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
18939	60	TTG ...	LAL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF	3T3, E14, Liver, MEF
310369	138	CTG ...	LSS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, Brain, E14, MEF
319302	48	ATG ...	MSR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	3T3, Brain, Liver
1292866	93	AGG ...	RHR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
419447	57	ATT ...	IPT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	C2C12
17206	36	ATG ...	MAT ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	sORF	3T3, Brain, E14, Liver
658069	279	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
308235	168	CTG ...	LSR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, Brain, E14
300965	57	CTG ...	LTV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	E14
658735	159	CTG ...	LLD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, MEF
294963	69	TTG ...	LVI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
891453	48	TTG ...	LRG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
17540	45	TTG ...	LPV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
656690	156	TTG ...	LDP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, MEF
91300	54	CTG ...	LKS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF	3T3, Brain, E14, Liver, MEF

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