Transcript 30743 | MetamORF

Transcript

ID CARD

MetamORF ID

30743

ENSMUST00000022890

Name

Rnf19a-201

Strand

Biotype

protein_coding

Start-end positions

36239934-36283147

CDS Start-stop positions

36241369-36265949

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:30945

Aliases

AA032313,
Dorfin, ENSMUSG00000022280, MGI:1353623,
NCBI:30945, OFF:Rnf19a, Rnf19,
Rnf19a, Ubce7ip2, UIP117,
XYbp

Chr 15

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1619439	42	CTG ...	LSR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
356764	36	CTG ...	LLA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
360798	36	ATG ...	MRP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
30742	123	GTG ...	VLV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Testis
360283	42	ATG ...	MGL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, Glioma, Liver, MEF, MESC
354711	36	CTG ...	LLR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
949557	240	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
690607	87	TTG ...	LAF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
684964	33	ATG ...	MFQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1619538	69	CTG ...	LKV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
687189	99	CTG ...	LCW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
366408	33	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1712301	45	TTG ...	LWA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1617943	48	TTG ...	LNF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
1619226	33	CTG ...	LKF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
687127	102	TTG ...	LLC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
1352191	54	TTG ...	LAM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
32154	135	ATG ...	MAV ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, BMDC, Glioma, Liver, MEF, MESC, Testis
1618961	39	CTG ...	LKN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
682962	45	ATG ...	MKA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Glioma, Liver, MEF, MESC
949532	282	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1618061	45	TTG ...	LLS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
687856	69	CTG ...	LES ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
32509	120	TTG ...	LVP ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Testis

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