Transcript 30720 | MetamORF

Transcript

ID CARD

MetamORF ID

30720

ENSMUST00000129354

Name

Arf3-202

Strand

Biotype

processed_transcript

Start-end positions

98741057-98763214

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:11842

Aliases

5430400P17Rik,
AI854770, Arf3, ENSMUSG00000051853,
MGI:99432, NCBI:11842, OFF:Arf3

Chr 15

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
32444	33	CTG ...	LPG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E, Spleen_B_cell, Testis
948952	69	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
421311	60	ATA ...	IPR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
30719	33	CTG ...	LGP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Testis
32318	264	CTG ...	LKS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Testis
948288	201	AAG ...	KTT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
421379	291	GTG ...	VEG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
948250	180	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
947871	174	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
31779	192	GTG ...	VEY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
469957	90	GTG ...	VFP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
31737	36	ATG ...	MLP ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, R1E, Spleen_B_cell, Testis
948227	228	CTG ...	LMV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
1001072	222	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
948467	246	AAG ...	KKE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
949466	216	CTG ...	LDA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
949571	252	ATC ...	IGK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
31950	51	ATG ...	MWR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Testis
359493	33	TTG ...	LWL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
949170	141	AGG ...	RNR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
949476	54	AGG ...	RTR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
948512	48	AGG ...	RLK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
472287	81	TTG ...	LSR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Spleen_B_cell
31907	39	TTG ...	LSP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Spleen_B_cell, Testis
949047	135	AGG ...	RFG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
32197	201	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
949415	237	ATC ...	IFT ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
948922	288	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
32425	60	GTG ...	VAR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, MEF, R1E, Spleen_B_cell, Testis

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