Transcript 30654 | MetamORF

Transcript

ID CARD

MetamORF ID

30654

ENSMUST00000172568

Name

L3mbtl2-202

Strand

Biotype

processed_transcript

Start-end positions

81663956-81688299

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:214669

Aliases

4732493N06Rik,
ENSMUSG00000022394, L3mbtl2, M4mbt,
MGI:2443584, NCBI:214669, OFF:L3mbtl2

Chr 15

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1182542	183	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
30653	117	GTG ...	VDC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
32333	45	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
31942	174	GTG ...	VHR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
1183569	174	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
31057	225	GTG ...	VDL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
469525	219	CTG ...	LME ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Spleen_B_cell
31651	195	GTG ...	VAT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
32010	99	GTG ...	VKE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Testis
470676	54	ATG ...	MRM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1181647	291	ATC ...	ISL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1143114	57	CTG ...	LGD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1180824	138	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1183779	144	AAG ...	KSY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1184680	216	ATC ...	IPS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1180605	183	AAG ...	KTQ ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1181640	63	AGG ...	RSP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
32468	150	GTG ...	VDT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
472013	39	CTG ...	LRI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
31396	63	CTG ...	LIH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
32737	282	TTG ...	LVG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Spleen_B_cell, Testis, v6-5
31538	51	GTG ...	VGW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
33186	279	GTG ...	VGS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, R1E, Spleen_B_cell, Testis, v6-5
33039	144	TTG ...	LGV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	E14, R1E, Testis, v6-5
470124	186	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1182447	300	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1180963	123	AAG ...	KHE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1180170	33	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
32576	234	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
471808	177	GTG ...	VVH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
32656	237	GTG ...	VES ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
32723	165	CTG ...	LED ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, R1E, Testis, v6-5
1143162	213	TTG ...	LDL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1180203	114	AAG ...	KTR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1182224	36	ATC ...	IFR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1183345	126	ATC ...	IPS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1182427	63	ATC ...	ISQ ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
31959	174	GTG ...	VSR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
1184098	204	AAG ...	KTR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
471219	36	ATG ...	MRH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
31798	75	CTG ...	LED ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, Testis
32466	153	GTG ...	VVD ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
1181283	285	TTG ...	LGA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
30816	105	GTG ...	VCV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
31638	246	GTG ...	VGM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis

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