Transcript 30625 | MetamORF

Transcript

ID CARD

MetamORF ID

30625

ENSMUST00000054266

Name

Slc45a4-201

Strand

Biotype

protein_coding

Start-end positions

73580293-73624744

CDS Start-stop positions

73581765-73605685

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:106068

Aliases

9330175B01Rik,
AW552276, ENSMUSG00000079020, MGI:2146236,
NCBI:106068, OFF:Slc45a4, Slc45a4

Chr 15

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
32887	297	CTG ...	LQR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
33109	270	CTG ...	LFS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
32507	51	CTG ...	LVL ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF, Testis, v6-5
31759	123	GTG ...	VCV ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF, Testis, v6-5
33190	132	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
32669	201	CTG ...	LLA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, R1E, Testis, v6-5
30646	63	ATG ...	MMM ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, C2C12, E14, MEF, Testis, v6-5
360505	45	GTG ...	VRQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1180952	102	AGG ...	RLL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
31519	147	ATG ...	MGS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, C2C12, E14, MEF, Testis, v6-5
32873	198	TTG ...	LAC ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, R1E, Testis, v6-5
30624	57	ATG ...	MKL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, MEF, Testis, v6-5
31681	60	ATG ...	MMK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, C2C12, E14, MEF, Testis, v6-5
360354	54	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
33035	126	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
32103	60	GTG ...	VSD ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Testis
1142204	93	ATG ...	MGH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
33128	210	TTG ...	LCL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, R1E, Testis, v6-5
32708	288	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
949247	39	AAG ...	KTA ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF Upstream	E14
1181021	51	AGG ...	RLF ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
31100	66	CTG ...	LCV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Testis

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