Transcript 305975

Transcript

ID CARD

MetamORF ID

305975

ENSMUST00000129676

Name

Rnf145-205

Strand

Biotype

processed_transcript

Start-end positions

44560019-44561977

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:74315

Aliases

3732413I11Rik,
ENSMUSG00000019189, MGI:1921565, NCBI:74315,
OFF:Rnf145, Rnf145, TMRF1

Chr 11

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
298575	90	ATG ...	MAL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1838115	162	GTG ...	VWL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
1842443	294	GTG ...	VNG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
1837437	108	GTG ...	VNK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
451014	48	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
305974	60	GTG ...	VAS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
296018	63	CTG ...	LSR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1838293	249	GTG ...	VVA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
1841594	261	GTG ...	VAL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
1841671	276	CTG ...	LLE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
446141	57	TTG ...	LRN ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
1839705	246	GTG ...	VAY ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
1839678	273	CTG ...	LEF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
1841091	123	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
1338615	204	GTG ...	VMG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
1840796	144	CTG ...	LGW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E

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