Transcript 30579 | MetamORF

Transcript

ID CARD

MetamORF ID

30579

ENSMUST00000081677

Name

Ppil3-201

Strand

Biotype

protein_coding

Start-end positions

58430997-58445486

CDS Start-stop positions

58431204-58444591

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:70225

Aliases

2310076N22Rik,
2510026K04Rik, Cyp10l, ENSMUSG00000026035,
MGI:1917475, NCBI:70225, OFF:Ppil3,
Ppil3

Chr 1

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
720973	63	CTG ...	LCE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
746965	156	TTG ...	LGG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
74834	33	TTG ...	LWV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
31136	66	CTG ...	LGD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
745481	162	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
30578	39	GTG ...	VRL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
444755	99	CTG ...	LLP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
670635	126	CTG ...	LYE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	E14, v6-5
496728	114	TTG ...	LVL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14
648407	96	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	v6-5
693610	177	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	3T3
518318	108	CTG ...	LCV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14
1721503	42	ATG ...	MVW ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
680874	96	ATG ...	MFE ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
31139	69	TTG ...	LLG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
651333	171	TTG ...	LGG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	3T3, E14
32448	75	ATG ...	MKL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	E14, Glioma, Liver, MEF, MESC, Testis
545439	81	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
321041	48	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
1227525	111	CTG ...	LYE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
703534	201	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	3T3
744994	63	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
685757	48	ATG ...	MRR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

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