Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

30556

ID

ENSMUST00000090227

Name

March6-201

Strand

-

Biotype

protein_coding

Start-end positions

31455899-31531037

CDS Start-stop positions

31459189-31530821

CDS Relative positions

-

Sequences

Transcript sequence

CCC ...

Gene

ID

NCBI:223455

Aliases

3830408G03,
ENSMUSG00000039100, F830029L24Rik, March6,
Marchf6, MGI:2442773, mKIAA0597,
NCBI:223455, OFF:Marchf6


Chr 15

ORFs

135 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

355035 30

TTG ...

LAF ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
1618694 33

CTG ...

LLD ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
852323 96

TTG ...

LFL ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver,
NSC
358990 87

CTG ...

LPG ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC
947949 30

ATT ...

ILD ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
364699 36

CTG ...

LAV ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
948681 216

CTG ...

LSV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, E14
355920 63

CTG ...

LVS ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
NSC
689366 30

ATG ...

MPT ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Liver
356382 141

GTG ...

VQI ...

Ribo-seq
GTG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, NSC
360312 72

CTG ...

LCC ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC
355026 45

ATG ...

MSC ...

Ribo-seq
ATG weak 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Glioma,
Liver, MEF, MESC,
NSC, Spleen_B_cell
364368 39

ATG ...

MLL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Glioma, Liver, MEF,
MESC
355028 48

TTG ...

LSC ...

Ribo-seq
TTG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, NSC,
Spleen_B_cell
1180985 33

ACG ...

TIQ ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
358641 120

CTG ...

LIS ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, NSC
1619006 54

TTG ...

LCV ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
364464 99

TTG ...

LTK ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
361186 33

CTG ...

LLA ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
851694 33

ATG ...

MAG ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver
1181723 33

AGG ...

RTM ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1619446 39

CTG ...

LLL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
366966 54

TTG ...

LFL ...

Ribo-seq
TTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, v6-5
852141 54

TTG ...

LLA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, NSC
362707 30

CTG ...

LLV ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Spleen_B_cell,
v6-5
364024 78

TTG ...

LWP ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC,
v6-5
31621 54

TTG ...

LAG ...

Ribo-seq
TTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, Testis
357421 36

ATG ...

MCS ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
NSC
31997 48

ATG ...

MLL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Testis
33178 54

ATG ...

MLL ...

Ribo-seq
ATG 10 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Glioma, Liver, MEF,
MESC, Testis
948728 54

ATT ...

ICW ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
362346 75

TTG ...

LLC ...

Ribo-seq
TTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC
366900 210

CTG ...

LLL ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, NSC
32054 114

TTG ...

LCV ...

Ribo-seq
TTG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC,
Testis, v6-5
355578 30

CTG ...

LQK ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain
31513 45

CTG ...

LLH ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Testis
363109 96

CTG ...

LRN ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
32307 93

GTG ...

VVT ...

Ribo-seq
GTG strong 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC,
Testis, v6-5
852513 90

TTG ...

LHF ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC
1180664 78

GTG ...

VHN ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
472020 75

CTG ...

LPG ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
B_cell, Brain, Liver,
Neutrophil, Spleen_B_cell
1181538 129

AGG ...

RST ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
358111 111

TTG ...

LAL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain
366540 51

CTG ...

LQK ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, Liver,
MEF, v6-5
363417 141

ATG ...

MVQ ...

Ribo-seq
ATG strong 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Glioma,
Liver, MEF, MESC,
NSC
1539245 138

ATG ...

MNY ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
366955 135

TTG ...

LLD ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC,
v6-5
366267 84

ATG ...

MHW ...

Ribo-seq
ATG 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
v6-5
850883 84

ATG ...

MSA ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    Downstream
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
365104 45

GTG ...

VYV ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
363801 66

ATG ...

MPR ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF
357447 81

GTG ...

VLA ...

Ribo-seq
GTG weak 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC, Spleen_B_cell, v6-5
682129 36

TTG ...

LIR ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver
33045 300

TTG ...

LYD ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    CDS
    sORF
Brain, Liver, Testis
360714 138

GTG ...

VQK ...

Ribo-seq
GTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, NSC
355037 123

CTG ...

LLI ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC
364500 69

CTG ...

LRN ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
366847 150

ATG ...

MNF ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, NSC,
v6-5
360063 84

CTG ...

LGA ...

Ribo-seq
CTG strong 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC
363483 30

ATG ...

MLL ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF, Neutrophil
356341 42

CTG ...

LDA ...

Ribo-seq
CTG strong 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, NSC,
Spleen_B_cell, v6-5
363927 132

CTG ...

LDW ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC, v6-5
1000836 75

TTG ...

LWP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
686699 33

ATG ...

MQA ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Liver, NSC
358054 81

GTG ...

VSC ...

Ribo-seq
GTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, NSC,
Spleen_B_cell
358437 36

ATG ...

MVS ...

Ribo-seq
ATG moderate 11 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC, Spleen_B_cell,
v6-5
30555 39

GTG ...

VRS ...

Ribo-seq
GTG weak 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, Testis, v6-5
360009 129

CTG ...

LDW ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
362302 132

TTG ...

LLD ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver
32943 276

GTG ...

VEM ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    CDS
    sORF
Brain, Liver, Testis
358561 60

TTG ...

LLN ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
366849 33

CTG ...

LMP ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF
32033 138

CTG ...

LFC ...

Ribo-seq
CTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC, Testis, v6-5
362982 105

CTG ...

LQY ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1452576 48

GTG ...

VHG ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
363948 195

TTG ...

LLS ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, NSC, v6-5
950380 72

AGG ...

RSA ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
354706 90

ATG ...

MQF ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
358759 42

TTG ...

LVN ...

Ribo-seq
TTG moderate 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, Spleen_B_cell,
v6-5
364978 216

GTG ...

VNY ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, NSC
948600 180

ATT ...

IPT ...

Ribo-seq
ATT weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
361173 93

CTG ...

LFL ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, NSC
363966 141

CTG ...

LFC ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, NSC,
v6-5
948325 150

TTG ...

LPG ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, E14
1144161 45

CTG ...

LGG ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, NSC, v6-5
1183753 30

ATA ...

ISS ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
948185 48

ATA ...

IYT ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
947912 72

AGG ...

RSA ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
360230 36

TTG ...

LPA ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
NSC, v6-5
366414 48

ATG ...

MNT ...

Ribo-seq
ATG 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Glioma,
Liver, MEF, MESC
32677 270

ATG ...

MQN ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    CDS
    sORF
Liver, Testis
1182053 51

AGG ...

RLS ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
32124 39

CTG ...

LCS ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell, Testis
365580 96

ATG ...

MCN ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC,
v6-5
366341 114

TTG ...

LAL ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Liver,
NSC, v6-5
362584 96

ATG ...

MLF ...

Ribo-seq
ATG moderate 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC, NSC
359129 78

GTG ...

VKT ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF
851623 30

TTG ...

LLA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, NSC
364653 201

CTG ...

LDT ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC
366572 51

TTG ...

LPA ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
v6-5
948898 159

AGG ...

RKK ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
360691 57

ATG ...

MAF ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Glioma,
Liver, MEF, MESC
1180184 141

ATT ...

IAG ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
682635 48

TTG ...

LSL ...

Ribo-seq
TTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, v6-5
950345 111

ATA ...

IHC ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
366684 36

ATG ...

MLL ...

Ribo-seq
ATG 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF, Neutrophil,
Spleen_B_cell
360428 69

CTG ...

LMP ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
363860 69

TTG ...

LSC ...

Ribo-seq
TTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC, Spleen_B_cell
364128 69

TTG ...

LHG ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
v6-5
362694 33

GTG ...

VAG ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
1144855 120

ATG ...

MLS ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, NSC, v6-5
33221 51

CTG ...

LLH ...

Ribo-seq
CTG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF, Testis
1001396 99

GTG ...

VLV ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver
357783 69

ATG ...

MQP ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
362973 96

GTG ...

VRM ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
364834 30

ATG ...

MSC ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, Glioma,
Liver, MEF, MESC,
Spleen_B_cell
31293 150

TTG ...

LLA ...

Ribo-seq
TTG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC, Testis, v6-5
364960 108

CTG ...

LQY ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC,
v6-5
356703 57

CTG ...

LPK ...

Ribo-seq
CTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC,
Spleen_B_cell, v6-5
1184110 78

TTG ...

LIR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
365095 69

TTG ...

LLN ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
359893 96

TTG ...

LWS ...

Ribo-seq
TTG weak 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, NSC,
Spleen_B_cell, v6-5
359577 78

TTG ...

LAN ...

Ribo-seq
TTG strong 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC, Spleen_B_cell, v6-5
364095 219

GTG ...

VHG ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC
367039 33

ATG ...

MTS ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF
948507 150

ACG ...

TRT ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
690694 225

TTG ...

LCV ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
NSC
365623 51

GTG ...

VAG ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
361611 111

CTG ...

LHE ...

Ribo-seq
CTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, NSC
948371 126

ACG ...

TAT ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
361568 126

CTG ...

LLL ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC
355697 60

CTG ...

LGS ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC
364108 204

CTG ...

LLD ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, NSC
32046 123

GTG ...

VHT ...

Ribo-seq
GTG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Liver, NSC,
Testis, v6-5
364136 36

CTG ...

LLM ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5