Transcript 30550 | MetamORF

Transcript

ID CARD

MetamORF ID

30550

ENSMUST00000149802

Name

Poldip3-205

Strand

Biotype

retained_intron

Start-end positions

83135688-83149329

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:73826

Aliases

1110008P04Rik,
AA408269, AL022852, C77954,
ENSMUSG00000041815, MGI:1921076, mKIAA1649,
NCBI:73826, OFF:Poldip3, PDIP46,
Poldip3, SKAR

Chr 15

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31451	183	GTG ...	VPQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
31032	63	TTG ...	LQA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
32005	195	TTG ...	LES ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
32556	246	GTG ...	VFA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
31687	33	CTG ...	LRS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
30738	36	CTG ...	LLR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
11690	87	GTG ...	VSK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
31676	117	TTG ...	LGS ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis
30786	162	GTG ...	VAD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
32050	297	CTG ...	LGV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
363858	33	ATG ...	MLS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
30896	231	GTG ...	VSG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
32654	210	GTG ...	VSG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
31921	135	TTG ...	LKR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
31308	270	CTG ...	LIH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
30561	267	TTG ...	LQK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
32598	135	TTG ...	LTP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
361388	75	GTG ...	VPL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
32517	177	TTG ...	LLT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
362961	48	CTG ...	LDE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
30898	105	ATG ...	MLG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
30979	258	CTG ...	LFD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E, Testis
30910	216	TTG ...	LEV ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
358151	30	TTG ...	LSI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
470599	54	CTG ...	LCP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
32544	210	CTG ...	LNS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Testis
11808	78	ATG ...	MPG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	R1E, Testis

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