Transcript 30157 | MetamORF

Transcript

ID CARD

MetamORF ID

30157

ENSMUST00000164617

Name

Nisch-205

Strand

Biotype

processed_transcript

Start-end positions

31200944-31206700

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:64652

Aliases

1200007D05Rik,
3202002H23Rik, AW494485, edsn,
ENSMUSG00000021910, I-1, MGI:1928323,
NCBI:64652, Nisch, OFF:Nisch

Chr 14

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1306842	285	CTG ...	LRH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
345573	72	GTG ...	VLV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, NSC
30197	123	GTG ...	VGS ...	Ribo-seq	GTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
1309990	255	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1492407	39	TTG ...	LCS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
348647	51	ATG ...	MWL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
947397	147	AGG ...	RPS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
1310188	240	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
350941	81	GTG ...	VFD ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1307223	105	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
349292	279	GTG ...	VAE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
343966	51	TTG ...	LWQ ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, v6-5
1307637	201	AAG ...	KRE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
344828	66	GTG ...	VFS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, NSC
348487	84	ATG ...	MSS ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, v6-5
351453	138	CTG ...	LPR ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
353047	177	CTG ...	LRH ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
1306874	180	GTG ...	VYL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
346906	30	GTG ...	VIF ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, NSC, v6-5
30156	108	GTG ...	VDT ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Testis, v6-5
348198	54	CTG ...	LMW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
352389	156	CTG ...	LSG ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
348906	117	TTG ...	LSQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, NSC
421174	102	ACG ...	TYT ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
674871	33	TTG ...	LTN ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, v6-5
351048	57	ATG ...	MSG ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, v6-5
1310359	132	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
352049	111	CTG ...	LSS ...	Ribo-seq	CTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, C2C12, E14, MEF, NSC, R1E, v6-5
28972	66	ATG ...	MAT ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, v6-5
1308770	90	GTG ...	VDT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14

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