Transcript 297210

Transcript

ID CARD

MetamORF ID

297210

ENSMUST00000021158

Name

Txndc17-201

Strand

Biotype

protein_coding

Start-end positions

72207547-72210015

CDS Start-stop positions

72207624-72209483

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:52700

Aliases

4831443O22Rik,
D11Ertd672e, ENSMUSG00000020803, MGI:1289248,
NCBI:52700, OFF:Txndc17, TRP14,
Txndc17, Txnl5

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
455867	42	CTG ...	LPS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
300803	30	TTG ...	LYP ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, Neutrophil, Spleen_B_cell
1288696	33	AAG ...	KTQ ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
457298	57	CTG ...	LCV ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
298064	36	CTG ...	LSI ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
450620	42	TTG ...	LWS ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1293290	33	AGG ...	RRQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
8665	39	ATG ...	MLP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
298690	39	GTG ...	VLS ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, v6-5
933432	126	AGG ...	RAR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
297209	33	CTG ...	LLY ...	Ribo-seq	CTG	moderate	14	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
297360	48	GTG ...	VLL ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
648747	33	CTG ...	LSA ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, R1E, v6-5

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