Transcript 296486

Transcript

ID CARD

MetamORF ID

296486

ENSMUST00000147781

Name

Rptor-211

Strand

Biotype

nonsense_mediated_decay

Start-end positions

119603698-119899576

CDS Start-stop positions

119603810-119817105

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:74370

Aliases

4932417H02Rik,
ENSMUSG00000025583, MGI:1921620, mKIAA1303,
NCBI:74370, OFF:Rptor, Rap,
Raptor, Rptor

Chr 11

ORFs

53 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
298085	84	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
303692	30	GTG ...	VYS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, NSC, v6-5
312339	63	GTG ...	VVK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, v6-5
649567	30	ATG ...	MTG ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
1123681	39	GTG ...	VWG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
304165	96	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
1294940	171	ATG ...	MER ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
301872	48	ATG ...	MCS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
297525	81	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Liver
1601467	96	GTG ...	VDP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
298152	51	CTG ...	LFT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
301588	39	ATG ...	MGT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	3T3, Glioma, Liver, MEF, MESC
293464	48	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
304968	63	CTG ...	LAV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, v6-5
1600913	78	GTG ...	VPE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
649391	42	TTG ...	LEL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, v6-5
302124	45	GTG ...	VQT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
1396501	108	CTG ...	LNV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
296367	108	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
299672	33	CTG ...	LLI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
296066	39	GTG ...	VNG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, v6-5
1395727	30	CTG ...	LIW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Liver
301841	87	CTG ...	LHL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	Liver
295124	57	CTG ...	LGD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, NSC
1487725	57	ATG ...	MAR ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
303952	105	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
293597	30	CTG ...	LIP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3
300526	48	CTG ...	LNG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	3T3, Brain, NSC
648345	45	ATG ...	MRR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS NMD Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1601926	117	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
298172	63	ATG ...	MHP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
311710	30	CTG ...	LCS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
306183	114	GTG ...	VAS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
292856	36	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, v6-5
301062	120	CTG ...	LLV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
640468	30	CTG ...	LFL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, v6-5
315045	45	ATG ...	MME ...	Ribo-seq	ATG		1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
645191	30	GTG ...	VRK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
309322	105	CTG ...	LDY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	3T3
305038	90	CTG ...	LNR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver, v6-5
309163	114	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
296720	81	CTG ...	LPM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
293739	138	GTG ...	VDE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver, v6-5
299548	105	TTG ...	LFR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
296797	108	CTG ...	LDD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, Liver, v6-5
298124	99	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3
294876	87	TTG ...	LAE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
294389	63	TTG ...	LWE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	3T3
1127262	69	CTG ...	LGT ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
310273	66	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
296485	108	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver
291939	39	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, v6-5
302320	45	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5

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