Transcript 29606 | MetamORF

Transcript

ID CARD

MetamORF ID

29606

ENSMUST00000023924

Name

Rpp14-201

Strand

Biotype

protein_coding

Start-end positions

8080367-8091834

CDS Start-stop positions

8083724-8089964

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:67053

Aliases

2610511E03Rik,
AA682089, ENSMUSG00000023156, MGI:1914303,
NCBI:67053, OFF:Rpp14, Rpp14

Chr 14

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
467671	30	GTG ...	VGT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	sORF Upstream	B_cell, Liver, NSC, Spleen_B_cell
343216	48	CTG ...	LWM ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
350971	192	GTG ...	VFL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Downstream sORF	Brain, v6-5
29605	51	ATG ...	MPN ...	Ribo-seq	ATG	weak	18	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
343872	60	GTG ...	VPL ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, R1E, Spleen_B_cell
343887	33	ATG ...	MEF ...	Ribo-seq	ATG	strong	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
1138767	204	TTG ...	LVT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
1179052	108	AAG ...	KSQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
349938	111	CTG ...	LKQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream sORF	Brain, v6-5
467766	39	TTG ...	LEP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell, v6-5
346222	36	GTG ...	VSM ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell
1309738	150	AAG ...	KSQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1138555	123	GTG ...	VFS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
349606	30	GTG ...	VVW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
346084	48	TTG ...	LET ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, MEF, v6-5
468522	153	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell
347756	141	GTG ...	VVL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Downstream sORF	Brain, v6-5
29881	33	GTG ...	VQE ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
345550	123	GTG ...	VGF ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14, v6-5
1139024	153	GTG ...	VAT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
1138627	207	CTG ...	LLV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
349808	63	ATG ...	MCT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, v6-5
349983	84	GTG ...	VSC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream sORF	Brain, v6-5
945296	120	ATT ...	IPV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF Upstream	BMDC
344717	249	TTG ...	LIN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Downstream sORF	Brain, v6-5
343914	120	GTG ...	VKR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream sORF	Brain, v6-5
346886	222	CTG ...	LGT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
346602	42	TTG ...	LGC ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, Liver, MEF, Spleen_B_cell
468696	132	CTG ...	LSR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, v6-5
465803	42	ATG ...	MFS ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
347800	30	ATG ...	MLE ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1138603	246	GTG ...	VST ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream sORF	E14, v6-5
353444	72	TTG ...	LGR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, R1E
1139799	177	GTG ...	VAW ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
348432	93	ATG ...	MWY ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14, v6-5
1139007	201	GTG ...	VTF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	v6-5
469147	150	CTG ...	LRG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell

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