Transcript 295530

Transcript

ID CARD

MetamORF ID

295530

ENSMUST00000081775

Name

Nfe2l1-201

Strand

Biotype

protein_coding

Start-end positions

96817414-96829968

CDS Start-stop positions

96819176-96827707

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:18023

Aliases

AA408798,
AW212678, ENSMUSG00000038615, LCR-F1,
Lcrf1, MGI:99421, NCBI:18023,
Nfe2l1, NRF1, OFF:Nfe2l1,
TCF-11, TCF11

Chr 11

ORFs

96 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
295529	75	GTG ...	VAA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, MEF, Spleen_B_cell, v6-5
648071	30	CTG ...	LAE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, NSC, v6-5
309324	228	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
447508	45	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
932897	111	ATA ...	IHT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
640339	84	CTG ...	LWL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
642493	162	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
645629	54	TTG ...	LIW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
774893	78	CTG ...	LVS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF
291624	90	CTG ...	LAL ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
451360	30	CTG ...	LQW ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
452479	33	TTG ...	LGF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
652149	42	CTG ...	LHR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
639807	138	GTG ...	VAF ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, v6-5
301071	66	ATG ...	MDE ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
659022	114	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
639626	90	CTG ...	LET ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, MEF
308896	63	TTG ...	LRA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Spleen_B_cell
643482	45	GTG ...	VSP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
646147	75	GTG ...	VPG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, v6-5
456546	87	CTG ...	LWR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, MEF, Spleen_B_cell
644218	54	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
648605	123	GTG ...	VRC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, v6-5
450200	45	GTG ...	VQR ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, Spleen_B_cell
296833	51	ATG ...	MWR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
91673	177	ATG ...	MWL ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, MEF, Neutrophil, v6-5
309905	45	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
776964	198	GTG ...	VQW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
305670	30	GTG ...	VDL ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, Liver, MEF, NSC, Spleen_B_cell
446877	63	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
18796	114	TTG ...	LCQ ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
449293	36	CTG ...	LRA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell, v6-5
1122052	30	CTG ...	LCM ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
446564	30	ATG ...	MAM ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, v6-5
305489	189	TTG ...	LHP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
644516	102	CTG ...	LPH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
91623	156	GTG ...	VCC ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, v6-5
647133	84	CTG ...	LTF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
645866	33	CTG ...	LPI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
309751	126	ATG ...	MWA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
646214	144	GTG ...	VNV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF, v6-5
934959	36	AAG ...	KNS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
292221	117	TTG ...	LTT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
647679	102	TTG ...	LRR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
645281	60	CTG ...	LAA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC
933567	120	AGG ...	RCQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
304711	144	TTG ...	LIW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
446232	36	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
293962	99	ATG ...	MLG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC
654788	99	CTG ...	LHS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
644816	48	CTG ...	LTQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
307671	54	GTG ...	VMW ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF
454203	39	GTG ...	VSS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Neutrophil, NSC, Spleen_B_cell
295755	168	TTG ...	LTS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
648248	60	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
644207	114	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
648721	66	TTG ...	LPS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
302748	33	CTG ...	LLV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
90851	78	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
21243	144	CTG ...	LGP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
931976	141	ACG ...	TAQ ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
642039	45	GTG ...	VQW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
299138	36	TTG ...	LSC ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF
309128	36	GTG ...	VNP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
648599	108	CTG ...	LRS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC
319117	63	TTG ...	LIW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
304032	219	CTG ...	LET ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC
656977	66	GTG ...	VTS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, MEF
646796	33	CTG ...	LLA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, NSC, v6-5
641821	165	CTG ...	LDC ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF Upstream	3T3, MEF, v6-5
453842	54	CTG ...	LSA ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
451910	99	CTG ...	LGA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Spleen_B_cell
296271	126	GTG ...	VRF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
771858	48	GTG ...	VAA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF
660102	123	ATG ...	MER ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
298894	75	CTG ...	LIY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
650258	57	CTG ...	LQS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
449685	57	GTG ...	VAR ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell, v6-5
19101	84	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
456499	60	GTG ...	VAA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, MEF, Spleen_B_cell
292251	243	GTG ...	VRF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
451887	39	GTG ...	VLG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	Liver, MEF, Spleen_B_cell, v6-5
299725	84	CTG ...	LRR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil
642869	51	CTG ...	LRV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
641753	66	CTG ...	LSL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC
20875	117	GTG ...	VLC ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, MEF, Neutrophil
446391	30	TTG ...	LVT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
454173	51	GTG ...	VRV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
650535	117	GTG ...	VLS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF
20738	90	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
296762	87	ATG ...	MWI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
932255	237	ATA ...	IFN ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
302687	147	TTG ...	LAG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
316930	90	CTG ...	LLW ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, MEF, Spleen_B_cell
301149	63	CTG ...	LKW ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell
307376	132	CTG ...	LGV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

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