Transcript 295402

Transcript

ID CARD

MetamORF ID

295402

ENSMUST00000151559

Name

Uqcr10-203

Strand

Biotype

processed_transcript

Start-end positions

4701975-4704334

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:66152

Aliases

1110020P15Rik,
AA960494, ENSMUSG00000059534, MGI:1913402,
NCBI:66152, OFF:Uqcr10, Ucrc,
Uqcr10

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
295401	108	CTG ...	LFF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E
776387	48	GTG ...	VKL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC
17376	93	TTG ...	LPS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, NSC, R1E, v6-5
888602	42	CTG ...	LWK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, R1E
305318	45	GTG ...	VRA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
935159	183	ACG ...	TIP ...	Ribo-seq	ACG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF
318707	150	CTG ...	LYS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, NSC, R1E, v6-5
308250	117	GTG ...	VGA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, R1E
1285103	42	AGG ...	RAQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
975516	105	ATC ...	IAV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	MEF
312752	141	TTG ...	LLF ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, NSC, R1E, v6-5
19076	198	GTG ...	VRQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, R1E
316499	99	GTG ...	VGA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, R1E, v6-5
315941	138	CTG ...	LFR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, NSC, R1E, v6-5
937589	162	ATC ...	IPS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
975225	123	ATC ...	IAV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	MEF
301390	156	CTG ...	LFR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, NSC, R1E
311174	159	TTG ...	LLF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, NSC, R1E
307370	168	CTG ...	LYS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, NSC, R1E
1130802	123	TTG ...	LPS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, NSC, v6-5
314358	90	CTG ...	LFF ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, MEF, NSC, R1E, v6-5
937582	165	ACG ...	TIP ...	Ribo-seq	ACG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF
313917	201	GTG ...	VRQ ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, R1E, v6-5
931274	180	ATC ...	IPS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1038513	69	CTG ...	LNH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
304858	54	CTG ...	LPC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF

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