Transcript 295066

Transcript

ID CARD

MetamORF ID

295066

ENSMUST00000139414

Name

Tbcd-204

Strand

Biotype

processed_transcript

Start-end positions

121601619-121617163

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:108903

Aliases

2310057L06Rik,
A030005L14Rik, ENSMUSG00000039230, MGI:1919686,
mKIAA0988, NCBI:108903, OFF:Tbcd,
Tbcd

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
299275	60	CTG ...	LVD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	NSC, v6-5
303360	81	GTG ...	VKL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
652047	66	CTG ...	LKM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
295065	42	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
308702	30	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	NSC
19444	45	TTG ...	LAN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
19807	48	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1599576	30	GTG ...	VGW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
302692	57	ATG ...	MPR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
313686	270	GTG ...	VRK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, v6-5
299046	78	GTG ...	VLT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	NSC, v6-5
299427	45	GTG ...	VLD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	NSC, v6-5
642365	39	ATG ...	MLR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
302041	63	CTG ...	LQS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
319327	246	CTG ...	LFL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, v6-5
297624	75	TTG ...	LLT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
318968	216	GTG ...	VIR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, v6-5
448253	81	GTG ...	VSV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1122882	39	ATG ...	MSC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	v6-5
451598	69	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
296951	54	TTG ...	LML ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
314627	288	GTG ...	VQF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, v6-5
453354	39	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
19928	57	CTG ...	LDQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5

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