Transcript 294570

Transcript

ID CARD

MetamORF ID

294570

ENSMUST00000152969

Name

Acly-204

Strand

Biotype

processed_transcript

Start-end positions

100482259-100494199

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:104112

Aliases

A730098H14Rik,
Acly, AW538652, ENSMUSG00000020917,
MGI:103251, NCBI:104112, OFF:Acly

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
294569	54	GTG ...	VVC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
310271	150	CTG ...	LDN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil
1289516	75	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
450570	96	CTG ...	LCM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil
1447020	78	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1482612	48	GTG ...	VFV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
1288437	69	GTG ...	VYR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
642819	63	TTG ...	LYL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil
450449	90	ATG ...	MKI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil
1337025	117	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1483767	63	TTG ...	LKE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
1078944	66	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
1079761	81	CTG ...	LRY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
643246	60	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1080070	138	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil
1393896	72	CTG ...	LVY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1037968	126	CTG ...	LYR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil
650289	57	CTG ...	LPR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil
1527788	144	ATG ...	MSI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1482973	42	GTG ...	VPR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
1079439	84	GTG ...	VLR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Neutrophil
1530162	126	GTG ...	VSP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
297429	108	GTG ...	VAY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Neutrophil

Export data