Transcript 294078

Transcript

ID CARD

MetamORF ID

294078

ENSMUST00000133601

Name

Poldip2-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

78512416-78522171

CDS Start-stop positions

-78519350

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:67811

Aliases

1300003F06Rik,
ENSMUSG00000001100, MGI:1915061, NCBI:67811,
OFF:Poldip2, Pdip38, Poldip2

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
20264	99	GTG ...	VHR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
307194	45	TTG ...	LRC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E, v6-5
310350	42	ATG ...	MTA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	Liver
446271	63	CTG ...	LFP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	NMD sORF	Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
300364	81	GTG ...	VQR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Liver, Spleen_B_cell, v6-5
1838270	129	GTG ...	VFL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
453380	42	CTG ...	LYD ...	Ribo-seq	CTG		10	sORFs_org_Mouse	NMD sORF	Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
298802	78	GTG ...	VLS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
91271	162	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	E14
21170	147	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14
1337159	51	TTG ...	LES ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF	E14
308484	45	ATG ...	MMT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	Brain, Liver
8468	39	CTG ...	LAR ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	NMD sORF	E14, Spleen_B_cell
294077	30	CTG ...	LQA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	Brain, E14, Liver, MEF, Neutrophil
296712	54	TTG ...	LVC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	Liver, MEF, Spleen_B_cell, v6-5
448474	42	GTG ...	VAT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	Brain, Neutrophil, R1E, Spleen_B_cell
20266	54	GTG ...	VLI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Liver
291645	51	GTG ...	VCL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	Liver, MEF, R1E, Spleen_B_cell, v6-5

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