Transcript 292076

Transcript

ID CARD

MetamORF ID

292076

ENSMUST00000135605

Name

Slc38a10-210

Strand

Biotype

processed_transcript

Start-end positions

120137970-120151322

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:72055

Aliases

1810073N04Rik,
ENSMUSG00000061306, MGI:1919305, NCBI:72055,
OFF:Slc38a10, Slc38a10

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
314176	177	GTG ...	VNS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil, R1E
21028	45	ATG ...	MAM ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF
292075	126	CTG ...	LVF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
936282	36	AGG ...	RLL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
318257	165	GTG ...	VGV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver
310595	39	ATG ...	MRL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF
307506	30	CTG ...	LRS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF
302962	132	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
19609	108	TTG ...	LPA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil
451383	117	TTG ...	LLA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil
296529	33	CTG ...	LLR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF
318124	111	CTG ...	LGA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil, R1E
294144	141	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
312664	102	CTG ...	LLL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil, R1E
314142	180	GTG ...	VVN ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil
310339	99	CTG ...	LML ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
303059	66	GTG ...	VIG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
314689	192	CTG ...	LIT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil
316591	96	CTG ...	LVF ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil, R1E, v6-5
297000	54	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
316861	153	GTG ...	VLT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver
20274	75	CTG ...	LGR ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, v6-5
648058	120	GTG ...	VLL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Neutrophil
312070	93	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1037818	81	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil

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