Transcript 292015

Transcript

ID CARD

MetamORF ID

292015

ENSMUST00000125598

Name

Map2k4-202

Strand

Biotype

protein_coding

Start-end positions

65690333-65719603

CDS Start-stop positions

65691759-

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:26398

Aliases

ENSMUSG00000033352,
JNKK1, Map2k4, MAPKK 4,
MEK4, MGI:1346869, MKK4,
NCBI:26398, OFF:Map2k4, PRKMK4,
Sek1, Serk1

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8138	81	GTG ...	VIS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
996665	219	GTG ...	VHQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	Brain, E14, Neutrophil, v6-5
296753	57	TTG ...	LWT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
312648	183	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	Brain, E14, Neutrophil, v6-5
316331	210	TTG ...	LGH ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	Brain, E14, Neutrophil
1296075	156	ACG ...	TKD ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
318741	201	ATG ...	MMS ...	Predicted Ribo-seq	ATG		6	sORFs_org_Mouse Mackowiak2015	sORF	Brain, E14, Neutrophil, v6-5
303968	60	ATG ...	MMS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
316557	54	TTG ...	LPR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain, MEF
310483	99	TTG ...	LMY ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, v6-5
311894	48	CTG ...	LDQ ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF	Brain, v6-5
316824	75	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Brain, MEF
657594	186	ATG ...	MSG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	3T3, Brain, E14, Neutrophil, v6-5
316079	66	TTG ...	LWT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Brain, MEF
316700	36	ATG ...	MNP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
8427	66	GTG ...	VDS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
292014	39	ATG ...	MNP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF	Brain, MEF
313789	198	ATG ...	MSA ...	Ribo-seq	ATG		6	sORFs_org_Mouse	sORF	BMDC, Brain, E14, Neutrophil, v6-5
302816	30	ATG ...	MLG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
311123	57	ATG ...	MSA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
318330	189	CTG ...	LMS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	Brain, E14, Neutrophil, v6-5
312938	117	CTG ...	LKH ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF	3T3, BMDC, Brain, E14, Neutrophil, v6-5
308017	48	CTG ...	LMS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
313237	54	GTG ...	VIA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
314236	90	GTG ...	VIS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Brain, MEF

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