Transcript 291444

Transcript

ID CARD

MetamORF ID

291444

ENSMUST00000142939

Name

Ppp2ca-202

Strand

Biotype

retained_intron

Start-end positions

52118743-52119692

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:19052

Aliases

ENSMUSG00000020349,
MGI:1321159, NCBI:19052, OFF:Ppp2ca,
PP2A, Ppp2ca, R75353

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
310979	210	ATG ...	MKN ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
298080	123	ATG ...	MTV ...	Ribo-seq	ATG	weak	16	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
935347	48	ATC ...	IMP ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
291528	39	ATG ...	MAS ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
936069	81	ATA ...	IPL ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
300464	45	ATG ...	MPM ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1078995	75	GTG ...	VSR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1284832	69	AAG ...	KIF ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1291377	153	ATA ...	ISP ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
292786	222	GTG ...	VNY ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
934686	66	ATA ...	IFL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
308221	234	GTG ...	VLL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, NSC, R1E
1080103	78	TTG ...	LVS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
291987	75	TTG ...	LAK ...	Ribo-seq	TTG	moderate	16	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
17387	147	GTG ...	VTC ...	Ribo-seq	GTG	weak	16	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
303385	168	CTG ...	LLF ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
299967	231	TTG ...	LLL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, NSC, R1E
1287065	129	ATC ...	IQM ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
312328	60	CTG ...	LRH ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
296058	54	CTG ...	LGD ...	Ribo-seq	CTG	moderate	17	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
302394	117	GTG ...	VVA ...	Ribo-seq	GTG	strong	14	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
296576	225	CTG ...	LVN ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, NSC, R1E, Spleen_B_cell, v6-5
310275	87	CTG ...	LVI ...	Ribo-seq	CTG	strong	16	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
304926	192	TTG ...	LLW ...	Ribo-seq	TTG	moderate	13	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
291443	189	CTG ...	LWS ...	Ribo-seq	CTG	weak	14	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
306333	114	GTG ...	VAG ...	Ribo-seq	GTG	strong	15	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5

Export data