Transcript 28501 | MetamORF

Transcript

ID CARD

MetamORF ID

28501

ENSMUST00000153488

Name

Naa30-205

Strand

Biotype

protein_coding

Start-end positions

49172226-49190866

CDS Start-stop positions

49172617-49187687

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:70646

Aliases

4930487N19Rik,
5730533P17Rik, AI447922, AW322455,
ENSMUSG00000036282, MGI:1922259, Naa30,
Nat12, NCBI:70646, OFF:Naa30

Chr 14

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
679951	69	ATG ...	MPW ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
29412	36	GTG ...	VAV ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Testis
1537195	75	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
347635	204	TTG ...	LLQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1307563	120	ACG ...	TKA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1350696	69	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
785841	66	GTG ...	VRG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
353473	96	TTG ...	LQV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, v6-5
348125	36	TTG ...	LFE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
348514	93	TTG ...	LQV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
346123	90	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
350322	51	ATG ...	MKI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
28500	84	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, Testis
349905	201	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
785435	159	ATG ...	MQE ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
28849	246	CTG ...	LGL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1308177	255	AGG ...	RYR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
346717	33	ATG ...	MNL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
29261	30	GTG ...	VVA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell, Testis
945467	138	AGG ...	RRT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1141639	114	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
349117	42	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain

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